FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5137, 146 aa
  1>>>pF1KE5137 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6206+/-0.000653; mu= 15.1315+/- 0.039
 mean_var=57.7714+/-11.432, 0's: 0 Z-trim(109.7): 7  B-trim: 11 in 1/52
 Lambda= 0.168740
 statistics sampled from 11052 (11055) to 11052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS210.1 CDA gene_id:978|Hs108|chr1               ( 146) 1012 253.8 2.7e-68


>>CCDS210.1 CDA gene_id:978|Hs108|chr1                    (146 aa)
 initn: 1012 init1: 1012 opt: 1012  Z-score: 1339.7  bits: 253.8 E(32554): 2.7e-68
Smith-Waterman score: 1012; 99.3% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KE5 MAQKRPACTLKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS21 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP
               70        80        90       100       110       120

              130       140      
pF1KE5 DGTYIVMTVQELLPSSFGPEDLQKTQ
       ::::::::::::::::::::::::::
CCDS21 DGTYIVMTVQELLPSSFGPEDLQKTQ
              130       140      




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:43:35 2016 done: Mon Nov  7 21:43:35 2016
 Total Scan time:  1.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]