FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3162, 380 aa 1>>>pF1KE3162 380 - 380 aa - 380 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8205+/-0.000719; mu= 12.2923+/- 0.044 mean_var=145.3417+/-28.571, 0's: 0 Z-trim(115.4): 16 B-trim: 49 in 1/51 Lambda= 0.106385 statistics sampled from 15984 (15993) to 15984 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.491), width: 16 Scan time: 3.380 The best scores are: opt bits E(32554) CCDS47694.1 TMEM229A gene_id:730130|Hs108|chr7 ( 380) 2664 419.8 2e-117 >>CCDS47694.1 TMEM229A gene_id:730130|Hs108|chr7 (380 aa) initn: 2664 init1: 2664 opt: 2664 Z-score: 2221.5 bits: 419.8 E(32554): 2e-117 Smith-Waterman score: 2664; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380) 10 20 30 40 50 60 pF1KE3 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL 310 320 330 340 350 360 370 380 pF1KE3 SVYQDLISNVLWRVQYVPAN :::::::::::::::::::: CCDS47 SVYQDLISNVLWRVQYVPAN 370 380 380 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 02:06:15 2016 done: Tue Nov 8 02:06:16 2016 Total Scan time: 3.380 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]