FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6619, 271 aa 1>>>pF1KE6619 271 - 271 aa - 271 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3423+/-0.00036; mu= 14.8788+/- 0.022 mean_var=69.5010+/-13.830, 0's: 0 Z-trim(113.3): 11 B-trim: 0 in 0/55 Lambda= 0.153843 statistics sampled from 22562 (22567) to 22562 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.265), width: 16 Scan time: 4.850 The best scores are: opt bits E(85289) NP_689958 (OMIM: 604639) neurexophilin-1 precursor ( 271) 1854 420.5 1.7e-117 NP_009157 (OMIM: 604635) neurexophilin-2 precursor ( 264) 1107 254.7 1.3e-67 NP_009156 (OMIM: 604636) neurexophilin-3 precursor ( 252) 847 196.9 3e-50 NP_009155 (OMIM: 604637) neurexophilin-4 precursor ( 308) 423 102.9 7.6e-22 XP_016874236 (OMIM: 604637) PREDICTED: neurexophil ( 223) 202 53.8 3.4e-07 >>NP_689958 (OMIM: 604639) neurexophilin-1 precursor [Ho (271 aa) initn: 1854 init1: 1854 opt: 1854 Z-score: 2230.5 bits: 420.5 E(85289): 1.7e-117 Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271) 10 20 30 40 50 60 pF1KE6 MQAACWYVLFLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MQAACWYVLFLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QTFRGKENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 QTFRGKENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 WGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 WGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 QTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICI 190 200 210 220 230 240 250 260 270 pF1KE6 YISFYSTDYKLVQKVCPDYNYHSDTPYFPSG ::::::::::::::::::::::::::::::: NP_689 YISFYSTDYKLVQKVCPDYNYHSDTPYFPSG 250 260 270 >>NP_009157 (OMIM: 604635) neurexophilin-2 precursor [Ho (264 aa) initn: 1106 init1: 1106 opt: 1107 Z-score: 1334.6 bits: 254.7 E(85289): 1.3e-67 Smith-Waterman score: 1107; 79.0% identity (93.3% similar) in 195 aa overlap (79-271:70-264) 50 60 70 80 90 100 pF1KE6 SSKDLSISRLLSQTFRGKENDTDLDLRYDTPEPYSE--QDLWDWLRNSTDLQEPRPRAKR : :.. ...:::: : :..::: :.:: NP_009 PGTLVGNVVHSRIISPLRLFVKQSPVPKPGPMAYADSMENFWDWLANITEIQEPLARTKR 40 50 60 70 80 90 110 120 130 140 150 160 pF1KE6 RPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVS ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: NP_009 RPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGLGNVSVS 100 110 120 130 140 150 170 180 190 200 210 220 pF1KE6 LVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSH ::::.:.:::... :.....:.::::::::::::.:.: :..:::.:::: ::::::::: NP_009 LVPPSKVVEFEVSPQSTLETKESKSFNCRIEYEKTDRAKKTALCNFDPSKICYQEQTQSH 160 170 180 190 200 210 230 240 250 260 270 pF1KE6 VSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG ::::::::::::::::.:::.::::::::::::::::.:::. :: NP_009 VSWLCSKPFKVICIYIAFYSVDYKLVQKVCPDYNYHSETPYLSSG 220 230 240 250 260 >>NP_009156 (OMIM: 604636) neurexophilin-3 precursor [Ho (252 aa) initn: 906 init1: 838 opt: 847 Z-score: 1023.1 bits: 196.9 E(85289): 3e-50 Smith-Waterman score: 847; 65.1% identity (86.9% similar) in 175 aa overlap (97-271:79-252) 70 80 90 100 110 120 pF1KE6 ENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFGWGDFHS : .: : .. : ..: ::.::::::.: NP_009 KRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPNHSPP-PSAKVKKIFGWGDFYS 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 NIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQQTVIDA ::::: ::::.::::::::::::::.:.::.:::::.:.:::::.: ::: :: :.: NP_009 NIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQIFIEA 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE6 KDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICIYISFYS : :: ::::.:.:::... ...::..::.: : ....:: ..: ::.::::.:.::.::: NP_009 KASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFYS 170 180 190 200 210 220 250 260 270 pF1KE6 TDYKLVQKVCPDYNYHSDTPYFPSG :::.:::::::::::::::::.::: NP_009 TDYRLVQKVCPDYNYHSDTPYYPSG 230 240 250 >>NP_009155 (OMIM: 604637) neurexophilin-4 precursor [Ho (308 aa) initn: 781 init1: 423 opt: 423 Z-score: 513.2 bits: 102.9 E(85289): 7.6e-22 Smith-Waterman score: 675; 44.4% identity (61.5% similar) in 257 aa overlap (79-268:51-307) 50 60 70 80 90 pF1KE6 SSKDLSISRLLSQTFRGKENDTDLDLRYDTPEPYSEQDL-------WDWLRNSTDLQE-- ::: : . : : : : : NP_009 VSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLGVGRAWSWAWPTNHTGALARA 30 40 50 60 70 80 100 110 120 130 140 150 pF1KE6 ------PRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYF : :.::.: .:... ::.::::::. ..:.:..::.::::::: :::::::: NP_009 GAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNGTFSVYF 90 100 110 120 130 140 160 170 180 pF1KE6 RHNSTGQGNVSVSLVPPTKIVEFD---------------LAQQTVID------------- ::::.. ::.:::.:::.: ::: :: . :. NP_009 RHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA 150 160 170 180 190 200 190 200 210 220 pF1KE6 ------------------------AKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQE ::.:..:::..::::...: :. : ::::..:. : NP_009 GPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTE 210 220 230 240 250 260 230 240 250 260 270 pF1KE6 QTQSHVSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG .:::...:::.::::::::..:: : :::::::::::::..:. ::: NP_009 HTQSQAAWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNFQSEHPYFG 270 280 290 300 >>XP_016874236 (OMIM: 604637) PREDICTED: neurexophilin-4 (223 aa) initn: 204 init1: 185 opt: 202 Z-score: 250.2 bits: 53.8 E(85289): 3.4e-07 Smith-Waterman score: 211; 35.7% identity (57.4% similar) in 115 aa overlap (79-174:51-165) 50 60 70 80 90 pF1KE6 SSKDLSISRLLSQTFRGKENDTDLDLRYDTPEPYSEQDL-------WDWLRNSTDLQE-- ::: : . : : : : : XP_016 VSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLGVGRAWSWAWPTNHTGALARA 30 40 50 60 70 80 100 110 120 130 140 150 pF1KE6 ------PRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYF : :.::.: .:... ::.::::::. ..:.:..::.::::::: :. . . XP_016 GAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNALTTNWC 90 100 110 120 130 140 160 170 180 190 200 pF1KE6 RHNS-TGQGNVSVSL---VPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTL :. . : . ::. .:: .. XP_016 RRCAQTITSRVSTPTSDSAPPQPVLSLPPNPSLTRWDPLPSVLPLLWPCRPLLPLWGRRG 150 160 170 180 190 200 271 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:50:19 2016 done: Tue Nov 8 14:50:20 2016 Total Scan time: 4.850 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]