Result of FASTA (ccds) for
pFN21AE6619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6619, 271 aa
1>>>pF1KE6619 271 - 271 aa - 271 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3794+/-0.00083; mu= 14.4042+/- 0.050
mean_var=66.6291+/-13.024, 0's: 0 Z-trim(106.3): 17 B-trim: 0 in 0/53
Lambda= 0.157124
statistics sampled from 8920 (8928) to 8920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.274), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS47540.1 NXPH1 gene_id:30010|Hs108|chr7 ( 271) 1854 429.0 1.7e-120
CCDS46421.1 NXPH2 gene_id:11249|Hs108|chr2 ( 264) 1107 259.7 1.5e-69
CCDS11550.1 NXPH3 gene_id:11248|Hs108|chr17 ( 252) 847 200.8 8.2e-52
CCDS8933.1 NXPH4 gene_id:11247|Hs108|chr12 ( 308) 423 104.7 8.4e-23
>>CCDS47540.1 NXPH1 gene_id:30010|Hs108|chr7 (271 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 2276.8 bits: 429.0 E(32554): 1.7e-120
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)
10 20 30 40 50 60
pF1KE6 MQAACWYVLFLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQAACWYVLFLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 QTFRGKENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QTFRGKENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICI
190 200 210 220 230 240
250 260 270
pF1KE6 YISFYSTDYKLVQKVCPDYNYHSDTPYFPSG
:::::::::::::::::::::::::::::::
CCDS47 YISFYSTDYKLVQKVCPDYNYHSDTPYFPSG
250 260 270
>>CCDS46421.1 NXPH2 gene_id:11249|Hs108|chr2 (264 aa)
initn: 1106 init1: 1106 opt: 1107 Z-score: 1361.9 bits: 259.7 E(32554): 1.5e-69
Smith-Waterman score: 1107; 79.0% identity (93.3% similar) in 195 aa overlap (79-271:70-264)
50 60 70 80 90 100
pF1KE6 SSKDLSISRLLSQTFRGKENDTDLDLRYDTPEPYSE--QDLWDWLRNSTDLQEPRPRAKR
: :.. ...:::: : :..::: :.::
CCDS46 PGTLVGNVVHSRIISPLRLFVKQSPVPKPGPMAYADSMENFWDWLANITEIQEPLARTKR
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE6 RPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS46 RPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGLGNVSVS
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE6 LVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSH
::::.:.:::... :.....:.::::::::::::.:.: :..:::.:::: :::::::::
CCDS46 LVPPSKVVEFEVSPQSTLETKESKSFNCRIEYEKTDRAKKTALCNFDPSKICYQEQTQSH
160 170 180 190 200 210
230 240 250 260 270
pF1KE6 VSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG
::::::::::::::::.:::.::::::::::::::::.:::. ::
CCDS46 VSWLCSKPFKVICIYIAFYSVDYKLVQKVCPDYNYHSETPYLSSG
220 230 240 250 260
>>CCDS11550.1 NXPH3 gene_id:11248|Hs108|chr17 (252 aa)
initn: 906 init1: 838 opt: 847 Z-score: 1043.7 bits: 200.8 E(32554): 8.2e-52
Smith-Waterman score: 847; 65.1% identity (86.9% similar) in 175 aa overlap (97-271:79-252)
70 80 90 100 110 120
pF1KE6 ENDTDLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFGWGDFHS
: .: : .. : ..: ::.::::::.:
CCDS11 KRGHISPKSRPMANSTLLGLLAPPGEAWGILGQPPNRPNHSPP-PSAKVKKIFGWGDFYS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 NIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQQTVIDA
::::: ::::.::::::::::::::.:.::.:::::.:.:::::.: ::: :: :.:
CCDS11 NIKTVALNLLVTGKIVDHGNGTFSVHFQHNATGQGNISISLVPPSKAVEFHQEQQIFIEA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE6 KDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICIYISFYS
: :: ::::.:.:::... ...::..::.: : ....:: ..: ::.::::.:.::.:::
CCDS11 KASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFYS
170 180 190 200 210 220
250 260 270
pF1KE6 TDYKLVQKVCPDYNYHSDTPYFPSG
:::.:::::::::::::::::.:::
CCDS11 TDYRLVQKVCPDYNYHSDTPYYPSG
230 240 250
>>CCDS8933.1 NXPH4 gene_id:11247|Hs108|chr12 (308 aa)
initn: 781 init1: 423 opt: 423 Z-score: 522.9 bits: 104.7 E(32554): 8.4e-23
Smith-Waterman score: 675; 44.4% identity (61.5% similar) in 257 aa overlap (79-268:51-307)
50 60 70 80 90
pF1KE6 SSKDLSISRLLSQTFRGKENDTDLDLRYDTPEPYSEQDL-------WDWLRNSTDLQE--
::: : . : : : : :
CCDS89 VSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLGVGRAWSWAWPTNHTGALARA
30 40 50 60 70 80
100 110 120 130 140 150
pF1KE6 ------PRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYF
: :.::.: .:... ::.::::::. ..:.:..::.::::::: ::::::::
CCDS89 GAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNGTFSVYF
90 100 110 120 130 140
160 170 180
pF1KE6 RHNSTGQGNVSVSLVPPTKIVEFD---------------LAQQTVID-------------
::::.. ::.:::.:::.: ::: :: . :.
CCDS89 RHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA
150 160 170 180 190 200
190 200 210 220
pF1KE6 ------------------------AKDSKSFNCRIEYEKVDKATKNTLCNYDPSKTCYQE
::.:..:::..::::...: :. : ::::..:. :
CCDS89 GPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTE
210 220 230 240 250 260
230 240 250 260 270
pF1KE6 QTQSHVSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG
.:::...:::.::::::::..:: : :::::::::::::..:. :::
CCDS89 HTQSQAAWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNFQSEHPYFG
270 280 290 300
271 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:50:18 2016 done: Tue Nov 8 14:50:19 2016
Total Scan time: 2.040 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]