FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6590, 181 aa
  1>>>pF1KE6590 181 - 181 aa - 181 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6368+/-0.000357; mu= 10.4691+/- 0.022
 mean_var=60.9039+/-12.565, 0's: 0 Z-trim(112.4): 4  B-trim: 58 in 2/46
 Lambda= 0.164343
 statistics sampled from 21328 (21330) to 21328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.25), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(85289)
NP_001139277 (OMIM: 607948,608212,612278,612279) i ( 181) 1167 285.1 4.2e-77
NP_001333486 (OMIM: 607948,608212,612278,612279) i ( 214) 1137 278.0 6.8e-75


>>NP_001139277 (OMIM: 607948,608212,612278,612279) immun  (181 aa)
 initn: 1167 init1: 1167 opt: 1167  Z-score: 1505.2  bits: 285.1 E(85289): 4.2e-77
Smith-Waterman score: 1167; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KE6 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE
              130       140       150       160       170       180

        
pF1KE6 Y
       :
NP_001 Y
        

>>NP_001333486 (OMIM: 607948,608212,612278,612279) immun  (214 aa)
 initn: 1155 init1: 1136 opt: 1137  Z-score: 1465.6  bits: 278.0 E(85289): 6.8e-75
Smith-Waterman score: 1137; 98.9% identity (99.4% similar) in 180 aa overlap (1-179:1-180)

               10        20        30        40        50        60
pF1KE6 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERV-C
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::. :
NP_001 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERLAC
              130       140       150       160       170       180

     180                                 
pF1KE6 EY                                
                                         
NP_001 HEKYLKSTPENSTRPRNIPSRRKLYVNLLRIFNS
              190       200       210    




181 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:38:17 2016 done: Tue Nov  8 14:38:17 2016
 Total Scan time:  3.740 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]