FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4076, 402 aa 1>>>pF1KE4076 402 - 402 aa - 402 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.6402+/-0.00109; mu= -11.5825+/- 0.066 mean_var=588.7011+/-119.249, 0's: 0 Z-trim(117.7): 11 B-trim: 65 in 1/54 Lambda= 0.052860 statistics sampled from 18519 (18528) to 18519 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.569), width: 16 Scan time: 3.090 The best scores are: opt bits E(32554) CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 ( 402) 2869 232.8 4.2e-61 CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 ( 346) 1034 92.8 5.1e-19 CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 ( 410) 975 88.4 1.3e-17 >>CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 (402 aa) initn: 2869 init1: 2869 opt: 2869 Z-score: 1210.4 bits: 232.8 E(32554): 4.2e-61 Smith-Waterman score: 2869; 100.0% identity (100.0% similar) in 402 aa overlap (1-402:1-402) 10 20 30 40 50 60 pF1KE4 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 RAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 EKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 EKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 EGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLTALRNRNLVHPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 EGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLTALRNRNLVHPT 310 320 330 340 350 360 370 380 390 400 pF1KE4 QLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV :::::::::::::::::::::::::::::::::::::::::: CCDS47 QLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV 370 380 390 400 >>CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 (346 aa) initn: 1103 init1: 923 opt: 1034 Z-score: 454.9 bits: 92.8 E(32554): 5.1e-19 Smith-Waterman score: 1037; 48.0% identity (69.0% similar) in 329 aa overlap (102-402:19-346) 80 90 100 110 120 130 pF1KE4 VAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEG-PRRLPEAAAAKGGPGESEAGAGGER .: : :: :. ...:: : . : .: CCDS31 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGG-GCGWAPFAGCS 10 20 30 40 140 150 160 pF1KE4 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPI--------------------- : : ::. : . . .: . ::: :. CCDS31 TRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 --CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMK :.::::: ::::::.::::::::: ::: ::..::::::::.:::: ..:.:.::. : CCDS31 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK 110 120 130 140 150 160 230 240 250 260 270 280 pF1KE4 QPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMY .: :::.::.:..::::. :..::::::.::..::.::..:: : :::.:.::::::::: CCDS31 NPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMY 170 180 190 200 210 220 290 300 310 320 330 340 pF1KE4 GFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEES----SRGESSTSRT ::::.::::::.:::..:::.::::.::: .: ::::::. :: . . :.:. . CCDS31 GFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNS 230 240 250 260 270 280 350 360 370 380 390 400 pF1KE4 LWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV : .. .: . . : .:::..:::....:: . : ..:. :::::::.: CCDS31 RTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV 290 300 310 320 330 340 >>CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 (410 aa) initn: 1124 init1: 958 opt: 975 Z-score: 429.7 bits: 88.4 E(32554): 1.3e-17 Smith-Waterman score: 1122; 47.2% identity (66.8% similar) in 392 aa overlap (28-402:57-410) 10 20 30 40 50 pF1KE4 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPAPVP--AAPRYLPPLPAS :: : : :.: : : :: :: : :. CCDS33 PAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQAPLPMHGDPQP-PGLAANNTLPALGAG 30 40 50 60 70 80 60 70 80 90 100 110 pF1KE4 PETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAA . : :: : .:. : .:::: :: :.. : :. :: : :. CCDS33 GWAGWR--GPREVVGREPP------PVPPPP-PLPPSSVE-----DDWGGPATEPPASLL 90 100 110 120 130 120 130 140 150 160 170 pF1KE4 KGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQ ... ... : .: . :. : .:: . :.:.:::: CCDS33 SSASSDDFCKEKTE-DRYSLGS-----------SLDSG-----------MRTPLCRICFQ 140 150 160 180 190 200 210 220 230 pF1KE4 GAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSI : ::::::.::::::::. ::: ::.::::::: :.:::: :.::::::. :.: :::.: CCDS33 GPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAI 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE4 SITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCI :.:..::::. :.::::::::::..::.::.::: : :::.:.:::::::::::::.::: CCDS33 SLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCI 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE4 GLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRG-----ESSTSRTLWLPLTA :::.::: .:::.::::.::: .: ::::::. :.:... : ..:.: .: . CCDS33 GLIIHEGPSVYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSE 290 300 310 320 330 340 360 370 380 390 400 pF1KE4 LRNRNLVHPTQL--------TSP--RFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVT .. . : : ..: . .:.:..::.....::::. : .:: :.::::: CCDS33 EETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVT 350 360 370 380 390 400 pF1KE4 SV .: CCDS33 TV 410 402 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:13:05 2016 done: Sun Nov 6 04:13:05 2016 Total Scan time: 3.090 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]