FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3988, 328 aa 1>>>pF1KE3988 328 - 328 aa - 328 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9054+/-0.00093; mu= 18.6167+/- 0.056 mean_var=75.4593+/-15.198, 0's: 0 Z-trim(106.3): 71 B-trim: 0 in 0/49 Lambda= 0.147645 statistics sampled from 8858 (8923) to 8858 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.274), width: 16 Scan time: 2.390 The best scores are: opt bits E(32554) CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4 ( 328) 2255 489.7 1.3e-138 CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11 ( 327) 1664 363.8 1e-100 CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11 ( 205) 902 201.3 5.4e-52 >>CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4 (328 aa) initn: 2255 init1: 2255 opt: 2255 Z-score: 2601.9 bits: 489.7 E(32554): 1.3e-138 Smith-Waterman score: 2255; 99.7% identity (99.7% similar) in 328 aa overlap (1-328:1-328) 10 20 30 40 50 60 pF1KE3 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI 250 260 270 280 290 300 310 320 pF1KE3 LDWLRYLVAWQPVVIGIVQGINYSLGLE ::::::::::::::::::::: :::::: CCDS47 LDWLRYLVAWQPVVIGIVQGIIYSLGLE 310 320 >>CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11 (327 aa) initn: 1664 init1: 1664 opt: 1664 Z-score: 1921.5 bits: 363.8 E(32554): 1e-100 Smith-Waterman score: 1664; 71.4% identity (90.9% similar) in 308 aa overlap (21-328:20-327) 10 20 30 40 50 60 pF1KE3 MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFL .... . :: :. : ... ::. ::::..::.::.::.. CCDS82 MAAVVEVEVGGGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILI 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 CVLVIAQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYIL .::.::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... CCDS82 ATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVT 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 FRATRKPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFG :::::::: ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.:::: CCDS82 FRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFG 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 IVSLFYGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDE : :::::::::. :::::.:.::::::::::: : .::. :::..::::::.:.:...: CCDS82 ISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSE 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 EGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQI ::.:::::.::::::::::::::::::::::::::::::::::::.:::::: : .:::. CCDS82 EGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQL 240 250 260 270 280 290 310 320 pF1KE3 LDWLRYLVAWQPVVIGIVQGINYSLGLE :::::::::::::.::.:::::: :::: CCDS82 LDWLRYLVAWQPVIIGVVQGINYILGLE 300 310 320 >>CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11 (205 aa) initn: 898 init1: 898 opt: 902 Z-score: 1047.0 bits: 201.3 E(32554): 5.4e-52 Smith-Waterman score: 902; 67.8% identity (89.4% similar) in 180 aa overlap (36-215:3-182) 10 20 30 40 50 60 pF1KE3 AARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFLCVLVI ... ::. ::::..::.::.::.. .::. CCDS73 MRVEHARMHAKHRGHEAMHAEMVLILIATLVV 10 20 30 70 80 90 100 110 120 pF1KE3 AQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYILFRATR ::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... ::::: CCDS73 AQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATR 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 KPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFGIVSLF ::: ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.::::: :: CCDS73 KPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLF 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 YGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDEEGLIE :::::::. :::::.:.:::::::: :.: CCDS73 YGLYYGVLERDFAEMCADYMASTIGRCSASTSSASVAGASWERSKRVPTAKRR 160 170 180 190 200 328 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:44:01 2016 done: Sat Nov 5 22:44:01 2016 Total Scan time: 2.390 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]