FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3675, 366 aa 1>>>pF1KE3675 366 - 366 aa - 366 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0468+/-0.000423; mu= 12.6515+/- 0.026 mean_var=81.0903+/-17.085, 0's: 0 Z-trim(112.5): 230 B-trim: 1497 in 2/51 Lambda= 0.142426 statistics sampled from 21104 (21386) to 21104 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.251), width: 16 Scan time: 6.770 The best scores are: opt bits E(85289) NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 2454 514.2 1.9e-145 NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 2385 500.0 3.5e-141 XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 2248 471.8 9.8e-133 NP_001273696 (OMIM: 612849) ubiquitin carboxyl-ter ( 354) 2104 442.2 8.2e-124 NP_001273697 (OMIM: 612849) ubiquitin carboxyl-ter ( 225) 1464 310.6 2.1e-84 XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 414 95.2 6.5e-19 XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 414 95.2 6.5e-19 NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 414 95.2 7e-19 XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19 XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19 XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19 XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 414 95.2 7.4e-19 XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 414 95.2 7.6e-19 NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 414 95.2 7.6e-19 NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 414 95.2 7.6e-19 XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 414 95.2 7.6e-19 XP_011523373 (OMIM: 612543) PREDICTED: ubiquitin c ( 739) 316 75.0 6.1e-13 XP_011523372 (OMIM: 612543) PREDICTED: ubiquitin c ( 914) 316 75.0 7.3e-13 XP_011523371 (OMIM: 612543) PREDICTED: ubiquitin c ( 925) 316 75.0 7.4e-13 XP_011523370 (OMIM: 612543) PREDICTED: ubiquitin c ( 959) 316 75.1 7.7e-13 XP_016880390 (OMIM: 612543) PREDICTED: ubiquitin c (1044) 316 75.1 8.2e-13 XP_016880389 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13 XP_005257599 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13 XP_005257600 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 316 75.1 8.8e-13 NP_001308220 (OMIM: 612543) ubiquitin carboxyl-ter (1123) 316 75.1 8.8e-13 XP_011523368 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13 XP_011523369 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13 XP_011523367 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 316 75.1 8.8e-13 NP_958804 (OMIM: 610186) ubiquitin carboxyl-termin ( 530) 301 71.8 3.9e-12 XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 296 70.7 5.6e-12 XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 296 70.8 6.7e-12 XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 296 70.8 6.7e-12 NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 296 70.8 7.2e-12 XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12 XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12 XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 296 70.8 7.5e-12 NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 296 70.8 7.8e-12 XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 286 68.7 2.3e-11 NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 286 68.7 2.4e-11 NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 286 68.7 2.6e-11 XP_011509703 (OMIM: 610570) PREDICTED: ubiquitin c ( 807) 288 69.3 3.6e-11 NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 286 68.8 3.7e-11 XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 286 68.8 3.7e-11 XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 286 68.8 3.7e-11 XP_011509702 (OMIM: 610570) PREDICTED: ubiquitin c (1112) 288 69.3 4.7e-11 XP_011509700 (OMIM: 610570) PREDICTED: ubiquitin c (1165) 288 69.3 4.9e-11 XP_016859915 (OMIM: 610570) PREDICTED: ubiquitin c (1236) 288 69.3 5.1e-11 XP_011509699 (OMIM: 610570) PREDICTED: ubiquitin c (1240) 288 69.3 5.2e-11 NP_060688 (OMIM: 610570) ubiquitin carboxyl-termin (1247) 288 69.3 5.2e-11 XP_006712675 (OMIM: 610570) PREDICTED: ubiquitin c (1248) 288 69.3 5.2e-11 >>NP_073743 (OMIM: 612849) ubiquitin carboxyl-terminal h (366 aa) initn: 2454 init1: 2454 opt: 2454 Z-score: 2732.2 bits: 514.2 E(85289): 1.9e-145 Smith-Waterman score: 2454; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_073 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL 310 320 330 340 350 360 pF1KE3 FYQSRE :::::: NP_073 FYQSRE >>NP_001127695 (OMIM: 612849) ubiquitin carboxyl-termina (359 aa) initn: 2385 init1: 2385 opt: 2385 Z-score: 2655.8 bits: 500.0 E(85289): 3.5e-141 Smith-Waterman score: 2385; 99.4% identity (99.7% similar) in 357 aa overlap (10-366:3-359) 10 20 30 40 50 60 pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR : .:::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL 300 310 320 330 340 350 pF1KE3 FYQSRE :::::: NP_001 FYQSRE >>XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin carbo (341 aa) initn: 2248 init1: 2248 opt: 2248 Z-score: 2504.0 bits: 471.8 E(85289): 9.8e-133 Smith-Waterman score: 2248; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333) 10 20 30 40 50 60 pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL ::::::::::::::::::::::::::::::::: XP_016 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEVGLQIILQ 310 320 330 340 pF1KE3 FYQSRE >>NP_001273696 (OMIM: 612849) ubiquitin carboxyl-termina (354 aa) initn: 2104 init1: 2104 opt: 2104 Z-score: 2343.8 bits: 442.2 E(85289): 8.2e-124 Smith-Waterman score: 2329; 96.7% identity (96.7% similar) in 366 aa overlap (1-366:1-354) 10 20 30 40 50 60 pF1KE3 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFR ::::::::::::::::::::::::::::::::::::::: ::::::::: NP_001 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVN------------ALYFCRPFR 10 20 30 40 70 80 90 100 110 120 pF1KE3 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNET 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQK 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVA 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYIL 290 300 310 320 330 340 pF1KE3 FYQSRE :::::: NP_001 FYQSRE 350 >>NP_001273697 (OMIM: 612849) ubiquitin carboxyl-termina (225 aa) initn: 1464 init1: 1464 opt: 1464 Z-score: 1636.1 bits: 310.6 E(85289): 2.1e-84 Smith-Waterman score: 1464; 100.0% identity (100.0% similar) in 217 aa overlap (117-333:1-217) 90 100 110 120 130 140 pF1KE3 IATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQN :::::::::::::::::::::::::::::: NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQN 10 20 30 150 160 170 180 190 200 pF1KE3 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE3 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE3 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL 160 170 180 190 200 210 330 340 350 360 pF1KE3 FDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRE ::::::: NP_001 FDDDIVEVGLQIILQ 220 >>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 320 init1: 166 opt: 414 Z-score: 460.6 bits: 95.2 E(85289): 6.5e-19 Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:588-918) 10 20 30 40 50 60 pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL :: :.::::: ::.:: : : : . . XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF 560 570 580 590 600 610 70 80 90 100 110 pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM . : .. ::: .:. : : : . : :: : . : :: : .: XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS 620 630 640 650 660 670 120 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI :::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . . XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 680 690 700 710 720 730 180 190 200 210 220 pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC ::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....:: XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 740 750 760 770 780 790 230 240 250 260 270 280 pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD : ..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG 800 810 820 830 840 850 290 300 310 320 330 340 pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL : . :.: .: : : : . ::: . :. . :. ::: : :...... XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK----- 860 870 880 890 900 350 360 pF1KE3 TSDISKNSESGYILFYQSRE : ..::::: : XP_016 -------SSAAYILFYTSLGPRVTDVAT 910 920 >>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 320 init1: 166 opt: 414 Z-score: 460.6 bits: 95.2 E(85289): 6.5e-19 Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:588-918) 10 20 30 40 50 60 pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL :: :.::::: ::.:: : : : . . XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF 560 570 580 590 600 610 70 80 90 100 110 pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM . : .. ::: .:. : : : . : :: : . : :: : .: XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS 620 630 640 650 660 670 120 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI :::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . . XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 680 690 700 710 720 730 180 190 200 210 220 pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC ::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....:: XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 740 750 760 770 780 790 230 240 250 260 270 280 pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD : ..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG 800 810 820 830 840 850 290 300 310 320 330 340 pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL : . :.: .: : : : . ::: . :. . :. ::: : :...... XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK----- 860 870 880 890 900 350 360 pF1KE3 TSDISKNSESGYILFYQSRE : ..::::: : XP_016 -------SSAAYILFYTSLGPRVTDVAT 910 920 >>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa) initn: 320 init1: 166 opt: 414 Z-score: 460.0 bits: 95.2 E(85289): 7e-19 Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:672-1002) 10 20 30 40 50 60 pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL :: :.::::: ::.:: : : : . . NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF 650 660 670 680 690 70 80 90 100 110 pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM . : .. ::: .:. : : : . : :: : . : :: : .: NP_001 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS 700 710 720 730 740 750 120 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI :::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . . NP_001 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 760 770 780 790 800 810 180 190 200 210 220 pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC ::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....:: NP_001 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 820 830 840 850 860 870 230 240 250 260 270 280 pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD : ..... :.... ::: .: .:::::.: . .. ::. : :::: : : . NP_001 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG 880 890 900 910 920 930 290 300 310 320 330 340 pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL : . :.: .: : : : . ::: . :. . :. ::: : :...... NP_001 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK----- 940 950 960 970 980 990 350 360 pF1KE3 TSDISKNSESGYILFYQSRE : ..::::: : NP_001 -------SSAAYILFYTSLGPRVTDVAT 1000 1010 >>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 320 init1: 166 opt: 414 Z-score: 459.5 bits: 95.2 E(85289): 7.4e-19 Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:749-1079) 10 20 30 40 50 60 pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL :: :.::::: ::.:: : : : . . XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF 720 730 740 750 760 770 70 80 90 100 110 pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM . : .. ::: .:. : : : . : :: : . : :: : .: XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS 780 790 800 810 820 830 120 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI :::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . . XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 840 850 860 870 880 890 180 190 200 210 220 pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC ::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....:: XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 900 910 920 930 940 950 230 240 250 260 270 280 pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD : ..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 290 300 310 320 330 340 pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL : . :.: .: : : : . ::: . :. . :. ::: : :...... XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK----- 1020 1030 1040 1050 1060 350 360 pF1KE3 TSDISKNSESGYILFYQSRE : ..::::: : XP_016 -------SSAAYILFYTSLGPRVTDVAT 1070 1080 >>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 320 init1: 166 opt: 414 Z-score: 459.5 bits: 95.2 E(85289): 7.4e-19 Smith-Waterman score: 464; 31.9% identity (57.5% similar) in 348 aa overlap (36-364:749-1079) 10 20 30 40 50 60 pF1KE3 IASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCR-PFRENVL :: :.::::: ::.:: : : : . . XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCL--CNAPHLADYF 720 730 740 750 760 770 70 80 90 100 110 pF1KE3 AYKAQQK--KKENLLTC---LADLFHSI--ATQKKKVGVIPPKKFISRLRKENDLFDNYM . : .. ::: .:. : : : . : :: : . : :: : .: XP_016 NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS 780 790 800 810 820 830 120 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQE----EKKQEKQNGKLKNGNMNEPAENNKPEL--TWVHEI :::..:.: .:.. . . :.. .. .:..: .: . . : : ... .: . . . XP_016 QQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVAL 840 850 860 870 880 890 180 190 200 210 220 pF1KE3 FQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSIT--HCLRDFSNTETLCSEQKYYC ::: . . ..::.:. : : :. ::. . .... : ::: ::. : : .....:: XP_016 FQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYC 900 910 920 930 940 950 230 240 250 260 270 280 pF1KE3 ETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLE-LRLFNTSSD : ..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQYVIG 960 970 980 990 1000 1010 290 300 310 320 330 340 pF1KE3 AVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGF--WLLFDDDIVEKIDAQAIEEFYGL : . :.: .: : : : . ::: . :. . :. ::: : :...... XP_016 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK----- 1020 1030 1040 1050 1060 350 360 pF1KE3 TSDISKNSESGYILFYQSRE : ..::::: : XP_016 -------SSAAYILFYTSLGPRVTDVAT 1070 1080 366 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:28:21 2016 done: Tue Nov 8 01:28:22 2016 Total Scan time: 6.770 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]