FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6169, 63 aa 1>>>pF1KE6169 63 - 63 aa - 63 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2922+/-0.000327; mu= 10.0018+/- 0.020 mean_var=33.5770+/- 6.813, 0's: 0 Z-trim(113.1): 10 B-trim: 1058 in 1/50 Lambda= 0.221337 statistics sampled from 22347 (22355) to 22347 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.262), width: 16 Scan time: 2.920 The best scores are: opt bits E(85289) NP_037519 (OMIM: 610843) cytochrome b-c1 complex s ( 63) 407 135.8 4.4e-33 NP_001003684 (OMIM: 610843) cytochrome b-c1 comple ( 62) 311 105.2 7.4e-24 >>NP_037519 (OMIM: 610843) cytochrome b-c1 complex subun (63 aa) initn: 407 init1: 407 opt: 407 Z-score: 714.9 bits: 135.8 E(85289): 4.4e-33 Smith-Waterman score: 407; 100.0% identity (100.0% similar) in 63 aa overlap (1-63:1-63) 10 20 30 40 50 60 pF1KE6 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY 10 20 30 40 50 60 pF1KE6 ENK ::: NP_037 ENK >>NP_001003684 (OMIM: 610843) cytochrome b-c1 complex su (62 aa) initn: 311 init1: 311 opt: 311 Z-score: 549.3 bits: 105.2 E(85289): 7.4e-24 Smith-Waterman score: 311; 100.0% identity (100.0% similar) in 50 aa overlap (1-50:1-50) 10 20 30 40 50 60 pF1KE6 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGVRACAIPDLG 10 20 30 40 50 60 pF1KE6 ENK NP_001 PA 63 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:02:10 2016 done: Tue Nov 8 10:02:11 2016 Total Scan time: 2.920 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]