FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6316, 281 aa 1>>>pF1KB6316 281 - 281 aa - 281 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3194+/-0.000452; mu= 12.9592+/- 0.029 mean_var=194.9564+/-45.561, 0's: 0 Z-trim(115.3): 139 B-trim: 1334 in 1/54 Lambda= 0.091856 statistics sampled from 25498 (25683) to 25498 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.301), width: 16 Scan time: 5.950 The best scores are: opt bits E(85289) NP_001272974 (OMIM: 612413) RNA-binding protein 7 ( 267) 428 69.1 1e-11 NP_057174 (OMIM: 612413) RNA-binding protein 7 iso ( 266) 424 68.5 1.5e-11 NP_005841 (OMIM: 154400,605593) splicing factor 3B ( 424) 239 44.3 0.00046 >>NP_001272974 (OMIM: 612413) RNA-binding protein 7 isof (267 aa) initn: 426 init1: 394 opt: 428 Z-score: 331.3 bits: 69.1 E(85289): 1e-11 Smith-Waterman score: 431; 35.1% identity (60.7% similar) in 285 aa overlap (1-276:1-266) 10 20 30 40 50 60 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP : : :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: NP_001 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF------ESCVKINSHNYRNEE :: ::. :::::.::::::..:.: :::.. . .. :. .: .: . : :. NP_001 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYER 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB6 MLVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVS . . .: : . . : :.. ::.. :.: .: :. : ..:: .:. NP_001 TMDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSP 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKW : .: ... . :: .: . ::.. .:.. : :. : : ... NP_001 SVQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGS 180 190 200 210 220 240 250 260 270 280 pF1KB6 THQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY :. . : . .. :... . : :. :..: . :.:.:. NP_001 DHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH 230 240 250 260 >>NP_057174 (OMIM: 612413) RNA-binding protein 7 isoform (266 aa) initn: 426 init1: 394 opt: 424 Z-score: 328.5 bits: 68.5 E(85289): 1.5e-11 Smith-Waterman score: 427; 34.5% identity (60.2% similar) in 284 aa overlap (1-276:1-265) 10 20 30 40 50 60 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP : : :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: NP_057 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFE-----SCVKINSHNYRNEEM :: ::. :::::.::::::..:.: :::.. . .. :. . .. : :. NP_057 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB6 LVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVSS . . .: : . . : :.. ::.. :.: .: :. : ..:: .:. : NP_057 MDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSPS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWT .: ... . :: .: . ::.. .:.. : :. : : ... NP_057 VQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGSD 180 190 200 210 220 240 250 260 270 280 pF1KB6 HQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY :. . : . .. :... . : :. :..: . :.:.:. NP_057 HHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH 230 240 250 260 >>NP_005841 (OMIM: 154400,605593) splicing factor 3B sub (424 aa) initn: 314 init1: 134 opt: 239 Z-score: 193.9 bits: 44.3 E(85289): 0.00046 Smith-Waterman score: 239; 46.2% identity (78.8% similar) in 80 aa overlap (4-82:7-86) 10 20 30 40 50 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVC .... : ::.::.:. .: : .:.::::::::.... . ::: :. ...::: NP_005 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 FKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEML : :...::: ..: :.:::.:: : NP_005 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF 70 80 90 100 110 120 281 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:58:40 2016 done: Mon Nov 7 23:58:41 2016 Total Scan time: 5.950 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]