FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6316, 281 aa 1>>>pF1KB6316 281 - 281 aa - 281 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9952+/-0.00104; mu= 8.0757+/- 0.063 mean_var=150.0839+/-32.784, 0's: 0 Z-trim(107.9): 98 B-trim: 520 in 1/50 Lambda= 0.104690 statistics sampled from 9781 (9880) to 9781 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.303), width: 16 Scan time: 1.770 The best scores are: opt bits E(32554) CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21 ( 281) 1908 299.8 1.4e-81 CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11 ( 267) 428 76.3 2.7e-14 CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11 ( 266) 424 75.7 4.1e-14 >>CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21 (281 aa) initn: 1908 init1: 1908 opt: 1908 Z-score: 1578.0 bits: 299.8 E(32554): 1.4e-81 Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281) 10 20 30 40 50 60 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD 190 200 210 220 230 240 250 260 270 280 pF1KB6 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY ::::::::::::::::::::::::::::::::::::::::: CCDS46 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY 250 260 270 280 >>CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11 (267 aa) initn: 426 init1: 394 opt: 428 Z-score: 370.2 bits: 76.3 E(32554): 2.7e-14 Smith-Waterman score: 431; 35.1% identity (60.7% similar) in 285 aa overlap (1-276:1-266) 10 20 30 40 50 60 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP : : :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: CCDS66 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF------ESCVKINSHNYRNEE :: ::. :::::.::::::..:.: :::.. . .. :. .: .: . : :. CCDS66 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYER 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB6 MLVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVS . . .: : . . : :.. ::.. :.: .: :. : ..:: .:. CCDS66 TMDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSP 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKW : .: ... . :: .: . ::.. .:.. : :. : : ... CCDS66 SVQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGS 180 190 200 210 220 240 250 260 270 280 pF1KB6 THQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY :. . : . .. :... . : :. :..: . :.:.:. CCDS66 DHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH 230 240 250 260 >>CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11 (266 aa) initn: 426 init1: 394 opt: 424 Z-score: 366.9 bits: 75.7 E(32554): 4.1e-14 Smith-Waterman score: 427; 34.5% identity (60.2% similar) in 284 aa overlap (1-276:1-265) 10 20 30 40 50 60 pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP : : :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: CCDS83 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFE-----SCVKINSHNYRNEEM :: ::. :::::.::::::..:.: :::.. . .. :. . .. : :. CCDS83 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB6 LVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVSS . . .: : . . : :.. ::.. :.: .: :. : ..:: .:. : CCDS83 MDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSPS 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 SLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWT .: ... . :: .: . ::.. .:.. : :. : : ... CCDS83 VQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGSD 180 190 200 210 220 240 250 260 270 280 pF1KB6 HQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY :. . : . .. :... . : :. :..: . :.:.:. CCDS83 HHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH 230 240 250 260 281 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:58:40 2016 done: Mon Nov 7 23:58:40 2016 Total Scan time: 1.770 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]