FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6288, 307 aa
  1>>>pF1KE6288 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4624+/-0.000701; mu= 15.5186+/- 0.042
 mean_var=71.9952+/-14.696, 0's: 0 Z-trim(110.4): 20  B-trim: 59 in 1/49
 Lambda= 0.151155
 statistics sampled from 11556 (11566) to 11556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.355), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS46560.1 AQP12B gene_id:653437|Hs108|chr2       ( 307) 2041 453.7  8e-128
CCDS8251.1 AQP11 gene_id:282679|Hs108|chr11        ( 271)  385 92.6 3.7e-19


>>CCDS46560.1 AQP12B gene_id:653437|Hs108|chr2            (307 aa)
 initn: 2041 init1: 2041 opt: 2041  Z-score: 2408.3  bits: 453.7 E(32554): 8e-128
Smith-Waterman score: 2041; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KE6 MAGLNVSLSFFFATFTLCEAARRASKALLPVGAYEVFAREAVGAVQLGACFLEMRTLVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGLNVSLSFFFATFTLCEAARRASKALLPVGAYEVFAREAVGAVQLGACFLEMRTLVEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GPWAGDFGPDLLLTLLFLLFLAHGVTLDGASANPTVSLQEFLMAEESLPGTLLKLAAQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GPWAGDFGPDLLLTLLFLLFLAHGVTLDGASANPTVSLQEFLMAEESLPGTLLKLAAQGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GMQAACTLTRLCWAWELSDLHLLQSLMAQSCSSALRTSVPHGALVEAACAFCFHLTLLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GMQAACTLTRLCWAWELSDLHLLQSLMAQSCSSALRTSVPHGALVEAACAFCFHLTLLHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 RHSPPAYSGPAVALLVTVTAYTAGPFTSAFFNPALAASVTFACSGHTLLEYVQVYWLGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RHSPPAYSGPAVALLVTVTAYTAGPFTSAFFNPALAASVTFACSGHTLLEYVQVYWLGPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TGMVLAVLLHQGRLPHLFQRNLFYGQKNKYRAPRGKPAPASGDTQTPAKGSSVREPGRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TGMVLAVLLHQGRLPHLFQRNLFYGQKNKYRAPRGKPAPASGDTQTPAKGSSVREPGRSG
              250       260       270       280       290       300

              
pF1KE6 VEGPHSS
       :::::::
CCDS46 VEGPHSS
              

>>CCDS8251.1 AQP11 gene_id:282679|Hs108|chr11             (271 aa)
 initn: 360 init1: 224 opt: 385  Z-score: 457.5  bits: 92.6 E(32554): 3.7e-19
Smith-Waterman score: 385; 30.6% identity (62.0% similar) in 255 aa overlap (7-257:17-261)

                         10        20        30        40        50
pF1KE6           MAGLNVSLSFFFATFTLCEAARRASKALLPVGAYEVFAREAVGAVQLGAC
                       ::......  :   :: ...  :   . ..:. : ... ::  :
CCDS82 MSPLLGLRSELQDTCTSLGLMLSVVLLMGLARVVARQQLHRPVAHAFVLEFLATFQLCCC
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KE6 FLEMRTLVELGPWAGDFGPDLLLTLLFLLFLAHGVTLDGASANPTVSLQEFLMAEESLPG
         :.. : :  :      :   :::.... :.::.:: :.:.::   .......  :   
CCDS82 THELQLLSEQHPAH----PTWTLTLVYFFSLVHGLTLVGTSSNPCGVMMQMMLGGMSPET
               70            80        90       100       110      

              120       130           140       150       160      
pF1KE6 TLLKLAAQGLGMQAACTLTRLC----WAWELSDLHLLQSLMAQSCSSALRTSVPHGALVE
         ..: :: ..  : :.  : :    :.  :.. :. .  .:  :.. .:... .....:
CCDS82 GAVRLLAQLVS--ALCS--RYCTSALWSLGLTQYHVSERSFA--CKNPIRVDLLKAVITE
        120         130         140       150         160       170

        170       180       190       200       210       220      
pF1KE6 AACAFCFHLTLLHLRHSPPAYSGPAVALLVTVTAYTAGPFTSAFFNPALAASVTFACSGH
       :.:.: :: .:::...         .: :.:  .:..: .:.: :::::: :. : :  .
CCDS82 AVCSFLFHSALLHFQEVRTKLRIHLLAALITFLVYAGGSLTGAVFNPALALSLHFMCFDE
              180       190       200       210       220       230

        230       240       250       260       270       280      
pF1KE6 TLLEYVQVYWLGPLTGMVLAVLLHQGRLPHLFQRNLFYGQKNKYRAPRGKPAPASGDTQT
       .. ..  ::::.:  :..: .:. .  :: :                             
CCDS82 AFPQFFIVYWLAPSLGILLMILMFSFFLPWLHNNHTINKKE                   
              240       250       260       270                    

        290       300       
pF1KE6 PAKGSSVREPGRSGVEGPHSS




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:48:47 2016 done: Tue Nov  8 11:48:47 2016
 Total Scan time:  1.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]