FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5013, 270 aa 1>>>pF1KE5013 270 - 270 aa - 270 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.6058+/-0.000383; mu= 2.2449+/- 0.024 mean_var=276.6168+/-56.019, 0's: 0 Z-trim(122.1): 168 B-trim: 0 in 0/58 Lambda= 0.077114 statistics sampled from 39413 (39643) to 39413 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.465), width: 16 Scan time: 5.260 The best scores are: opt bits E(85289) NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 1830 216.1 5.6e-56 NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 429 60.2 4.8e-09 NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 299 45.9 0.00012 NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 288 44.7 0.00029 NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 276 43.2 0.00067 NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 275 43.1 0.00074 NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330) 275 43.2 0.00077 NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 271 42.6 0.00087 NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 269 42.4 0.0011 NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 266 42.1 0.0013 NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 263 41.8 0.0018 NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 263 41.9 0.002 XP_011509370 (OMIM: 113200,113300,142989,186000,18 ( 324) 262 41.7 0.0021 NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 262 41.7 0.0021 NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 262 41.7 0.0021 NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 259 41.3 0.0024 NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 261 41.7 0.0026 NP_006352 (OMIM: 604607) homeobox protein Hox-B13 ( 284) 256 41.0 0.003 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 255 40.8 0.003 NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 254 40.7 0.0032 XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 254 40.7 0.0032 NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 254 40.9 0.0041 NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 253 40.7 0.0043 XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 250 40.2 0.0043 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 253 40.8 0.0044 NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 249 40.1 0.0046 NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 253 40.8 0.0048 NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 241 38.8 0.005 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 250 40.4 0.0052 NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 249 40.2 0.0054 NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 247 40.0 0.0057 NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 250 40.5 0.0059 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 40.4 0.0069 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 40.4 0.0069 NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 244 39.8 0.0091 NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 239 39.0 0.0093 >>NP_067016 (OMIM: 142988) homeobox protein Hox-D12 [Hom (270 aa) initn: 1830 init1: 1830 opt: 1830 Z-score: 1126.0 bits: 216.1 E(85289): 5.6e-56 Smith-Waterman score: 1830; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN 190 200 210 220 230 240 250 260 270 pF1KE5 LSDQQVKIWFQNRRMKKKRVVLREQALALY :::::::::::::::::::::::::::::: NP_067 LSDQQVKIWFQNRRMKKKRVVLREQALALY 250 260 270 >>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom (282 aa) initn: 651 init1: 401 opt: 429 Z-score: 283.4 bits: 60.2 E(85289): 4.8e-09 Smith-Waterman score: 655; 44.6% identity (65.3% similar) in 294 aa overlap (1-270:1-282) 10 20 30 40 50 60 pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP : :..: :.:: :.:... :.::: :.: .:.:: .:: .:::: :. NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPR-------RDNVCSL 10 20 30 40 50 70 80 90 100 110 pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPP---TAKDGPEEQAKFY--APEAAAGP-----E . :. : .:. :::: :: :..:.:: : . . :..: : : : .: : NP_776 SWPS-AEPCNGYPQPYL-GS-PVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKRE 60 70 80 90 100 110 120 130 140 150 160 pF1KE5 ERGRTRPSFAPESSLAPAVAALKAA---KYDYA--GVGRATPGSTTLLQGAPCAPGFKDD :::: :. .: ..: : . : ::::: : : :.. . : ....: NP_776 ERGRD-PGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESD 120 130 140 150 160 170 180 190 200 210 pF1KE5 TKGPLNLNMTVQAAGVA---SCLRPSLP------DGLPWGAAPGRARKKRKPYTKQQIAE ... : :: ..::.. : . : : .: :: .:.:::::::.: :.:: NP_776 SSSSL-LNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE 170 180 190 200 210 220 220 230 240 250 260 270 pF1KE5 LENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY ::.::::::::.::.:.:::.::::::::::::::::::::::..::::::... NP_776 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF 230 240 250 260 270 280 >>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa) initn: 344 init1: 282 opt: 299 Z-score: 204.3 bits: 45.9 E(85289): 0.00012 Smith-Waterman score: 364; 38.8% identity (53.4% similar) in 232 aa overlap (35-260:126-324) 10 20 30 40 50 60 pF1KE5 SLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPA : ::: . .: : :. ::. : NP_067 GGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPH 100 110 120 130 140 150 70 80 90 100 110 120 pF1KE5 GATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFAPESS : . : .. . .. : :. : .: . .:: ::: :: : : : . NP_067 GPA---GAASNFYSAVGRNGILP----QGFD---QFY--EAAPGPPFAGPQPP--PPPAP 160 170 180 190 200 130 140 150 160 170 pF1KE5 LAPAVAALKAAKYDYAGVG------RATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQA : :: :. :: : .::::: .:: : : : .:: NP_067 PQPEGAADKGDPRTGAGGGGGSPCTKATPGSEP--KGA--AEGSGGDGEGP--------- 210 220 230 240 180 190 200 210 220 230 pF1KE5 AGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNR : :. . : ..:: :.:::: :::: :: ::: ::. : .::..:: .:: NP_067 PGEAGAEKSSS------AVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRM 250 260 270 280 290 300 240 250 260 270 pF1KE5 LNLSDQQVKIWFQNRRMKKKRVVLREQALALY :::.:.::::::::::::.:.. NP_067 LNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF 310 320 330 >>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa) initn: 281 init1: 236 opt: 288 Z-score: 197.4 bits: 44.7 E(85289): 0.00029 Smith-Waterman score: 288; 32.9% identity (58.5% similar) in 207 aa overlap (57-260:146-343) 30 40 50 60 70 80 pF1KE5 SNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLGLQ : .:. ::.. .: .. :. .: NP_055 VRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYG-IKPETRAAPAPATAA 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE5 PPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRAT :.... ... : ... : .: . : :. .: : .:: .. ::.: :: NP_055 STTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAAT 180 190 200 210 220 230 150 160 170 180 190 200 pF1KE5 PGSTTLLQGAPCAPGFKDDTKGP---LNLNMTVQAAGVASCLRPSLPDGLPWGAAPGRAR :. :. :. .: : :. . .. . : :. : . : : . .: NP_055 -GT-----GGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAA-NWIHARS-TR 240 250 260 270 280 210 220 230 240 250 260 pF1KE5 KKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLR ::: :::: : :::.::: : ...:..: :.. :::...:::::::::::: :.. NP_055 KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKE 290 300 310 320 330 340 270 pF1KE5 EQALALY NP_055 KCPKGD 350 >>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa) initn: 306 init1: 255 opt: 276 Z-score: 191.0 bits: 43.2 E(85289): 0.00067 Smith-Waterman score: 278; 32.4% identity (54.3% similar) in 210 aa overlap (55-260:107-290) 30 40 50 60 70 80 pF1KE5 YFSNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLG :.. . . ..:: .: . : : NP_055 LEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAG 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE5 LQPPTAKDGPEEQA--KFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGV . . :.. :: .:. .: : : :. : :. : . : NP_055 FYSSVNKNSVLPQAFDRFF-DNAYCG----GGDPPAEPPCSG-----------KGEAKGE 140 150 160 170 180 150 160 170 180 190 200 pF1KE5 GRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAGVASCLRPSLPDGLPWGAAPG-- .: :.: .. : . .. : : . .... . .:. ::::. NP_055 PEAPPASGLASRAEAGAEAEAEEE----NTNPSSSGSAHSVAKEPAK------GAAPNAP 190 200 210 220 230 210 220 230 240 250 260 pF1KE5 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV :.:::: ::.: :: ::: ::. : .::..:: .:: :::.:.::::::::::::.:.. NP_055 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 240 250 260 270 280 290 270 pF1KE5 VLREQALALY NP_055 SRDRLQYFSGNPLL 300 >>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa) initn: 319 init1: 258 opt: 275 Z-score: 190.2 bits: 43.1 E(85289): 0.00074 Smith-Waterman score: 282; 35.8% identity (56.6% similar) in 173 aa overlap (88-260:137-299) 60 70 80 90 100 110 pF1KE5 CAPAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRP : : : : : . .:: :. . : NP_005 LAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETA-YGTPENLASSDYPGDKSA 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE5 SFAPESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQ .: .. : ..:: :: : . . :. . : : :. . : . . . NP_005 EKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE-KERRRRPESSSSPES 170 180 190 200 210 220 180 190 200 210 220 230 pF1KE5 AAGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSN ..: . . :.. :.:::: :::: :: ::: ::. . .::..:: .:: NP_005 SSGHT--------EDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSR 230 240 250 260 270 240 250 260 270 pF1KE5 RLNLSDQQVKIWFQNRRMKKKRVVLREQALALY :::.:.::::::::::::.:.. NP_005 MLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL 280 290 300 310 >>NP_059106 (OMIM: 142976,614931) homeobox protein Hox-C (330 aa) initn: 343 init1: 242 opt: 275 Z-score: 190.0 bits: 43.2 E(85289): 0.00077 Smith-Waterman score: 293; 29.4% identity (56.9% similar) in 255 aa overlap (41-270:84-328) 20 30 40 50 60 pF1KE5 YVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGA----LPWAATPASCAP--AQPA :.. :.:: .: . .::: : :. NP_059 APSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPT 60 70 80 90 100 110 70 80 90 100 110 pF1KE5 GATAFGGFSQPYLAG------SGPLGLQPPTAKDGPEEQAKFYAPEAA-AGPEERGRTR- ...: :.. :. .. : ..:: : . :. : .: : . .:.. NP_059 SSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGD--KYPEPSGALPGDDLSSRAKE 120 130 140 150 160 170 120 130 140 150 160 pF1KE5 ----PSFAPESSLAPAVAALKAAKYDYAGV-GRATPGSTTLLQGAPCAPGFKD--DTKG- :::: . :. .... :. :. : .:. : . :.. ..: NP_059 FAFYPSFASSYQAMPGYLDVSVVP----GISGHPEPRHDALI---P-VEGYQHWALSNGW 180 190 200 210 220 170 180 190 200 210 220 pF1KE5 PLNLNMTVQAAGVASCLRPSLPDGLPWG---AAPGRARKKRKPYTKQQIAELENEFLVNE .. . . . : . .:: .: .. :.:::: :::: :. :::.:. ... NP_059 DSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASK 230 240 250 260 270 280 230 240 250 260 270 pF1KE5 FINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY ::...::...: :::..:: :::::::.:.:.:: . .: :. NP_059 FITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST 290 300 310 320 330 >>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa) initn: 277 init1: 243 opt: 271 Z-score: 189.0 bits: 42.6 E(85289): 0.00087 Smith-Waterman score: 294; 29.9% identity (55.2% similar) in 261 aa overlap (23-265:9-247) 10 20 30 40 50 pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPA---- :.: ... . .. : :: ..: : . :. NP_076 MSISGTLSSYYVDSIISHESEDA--PPAKFPSGQYASSRQPGHAEH 10 20 30 40 60 70 80 90 100 pF1KE5 ----SCA--PAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDG-PEEQAKFY------AP ::. : :. ..... .: :. .:: : .: .: : .... :: NP_076 LEFPSCSFQPKAPVFGASWAPLS-PHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAP 50 60 70 80 90 100 110 120 130 140 150 160 pF1KE5 EAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFK .. :.: :. . . : :. :: . .:. ... : ..:.. ::. NP_076 RGEAAP---GQGQAAVKAEPLLGAPGELLKQGTPEYSL--ETSAGREAVLSNQ--RPGYG 110 120 130 140 150 170 180 190 200 210 220 pF1KE5 DDTKGPLNLNMTVQAAGVASCLRPSLPD-GLPWGAAPGRARKKRKPYTKQQIAELENEFL :. : . ::. . . : : . .:::: :::: : :::.::: NP_076 DNKI----------CEGSEDKERPDQTNPSANWLHARS-SRKKRCPYTKYQTLELEKEFL 160 170 180 190 200 230 240 250 260 270 pF1KE5 VNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY : ...:..:.:.. ::::..:::::::::::: :.. .:: NP_076 FNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMN-KEQGKE 210 220 230 240 250 >>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa) initn: 269 init1: 242 opt: 269 Z-score: 187.4 bits: 42.4 E(85289): 0.0011 Smith-Waterman score: 287; 32.6% identity (54.3% similar) in 267 aa overlap (11-260:11-264) 10 20 30 40 50 pF1KE5 MCERSLYRAGYVGS-LLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCA :: : ::. .. : . . : : :. :: : : : : NP_689 MATTGALGNYYVDSFLLGADAADELSVGRYAP--GTLGQ-PP----RQAATLAEHPDFSP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PAQPAGATAFGGFSQP-YLAGSGPLGLQPPTAKDGPEEQAKFY---APEAAAGPE---ER . . ::.::. .: . ::.. . :.: ... . :: :::.:. : NP_689 CSFQSKATVFGASWNPVHAAGANAV----PAAVYHHHHHHPYVHPQAPVAAAAPDGRYMR 60 70 80 90 100 120 130 140 150 160 pF1KE5 GRTRP-----SFAPESSLAP---AVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKD . .: ::: : : :.: . : . : . : :.: . :. NP_689 SWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQ 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE5 DTKGPLNLNMTV-QAAGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLV ..: .. : . ...: . :. : . : : . .:::: ::::.: :::.::: NP_689 PSEGAFSENNAENESGGDKPPIDPNNP-AANWLHARS-TRKKRCPYTKHQTLELEKEFLF 170 180 190 200 210 220 230 240 250 260 270 pF1KE5 NEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY : ...:..: :.. :::...:::::::::::: :.. NP_689 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 230 240 250 260 270 >>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa) initn: 278 init1: 237 opt: 266 Z-score: 185.8 bits: 42.1 E(85289): 0.0013 Smith-Waterman score: 277; 31.9% identity (53.6% similar) in 263 aa overlap (11-260:11-250) 10 20 30 40 50 pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASC-- :: ::.. .. : ... : : : : . : : .: . :: NP_008 MSATGPISNYYVDSLISHDNED--LLASRFPATG---AHPAAARPSGLVPDCSDFPSCSF 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 APAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPS :: . .:... . . : : :: . : . . . : ..: . :: NP_008 APKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGAD-TRYMRTWLEPLSGA------VSFPS 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 FAPESSLAPAVA--ALKAAKYDYA-GVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMT : : .. :. : . . : . : ::. : . : .:: : ..: .: . NP_008 F-PAGGRHYALKPDAYPGRRADCGPGEGRSYP---DYMYG---SPGELRD-RAPQTLP-S 110 120 130 140 150 180 190 200 210 220 pF1KE5 VQAAGVASC--------LRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFI .: ..:. : :: : . : : . .:::: :::: : :::.::: : .. NP_008 PEADALAGSKHKEEKADLDPSNPVA-NWIHARS-TRKKRCPYTKYQTLELEKEFLFNMYL 160 170 180 190 200 210 230 240 250 260 270 pF1KE5 NRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY .:..: :.. :::...:::::::::::: :.. NP_008 TRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 220 230 240 250 260 270 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:09:15 2016 done: Tue Nov 8 04:09:16 2016 Total Scan time: 5.260 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]