FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5013, 270 aa 1>>>pF1KE5013 270 - 270 aa - 270 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2023+/-0.000878; mu= 4.3925+/- 0.053 mean_var=252.0074+/-52.367, 0's: 0 Z-trim(114.9): 137 B-trim: 0 in 0/52 Lambda= 0.080792 statistics sampled from 15346 (15498) to 15346 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.476), width: 16 Scan time: 2.060 The best scores are: opt bits E(32554) CCDS46456.1 HOXD12 gene_id:3238|Hs108|chr2 ( 270) 1830 225.5 3.1e-59 >>CCDS46456.1 HOXD12 gene_id:3238|Hs108|chr2 (270 aa) initn: 1830 init1: 1830 opt: 1830 Z-score: 1176.9 bits: 225.5 E(32554): 3.1e-59 Smith-Waterman score: 1830; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN 190 200 210 220 230 240 250 260 270 pF1KE5 LSDQQVKIWFQNRRMKKKRVVLREQALALY :::::::::::::::::::::::::::::: CCDS46 LSDQQVKIWFQNRRMKKKRVVLREQALALY 250 260 270 270 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:09:15 2016 done: Tue Nov 8 04:09:15 2016 Total Scan time: 2.060 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]