FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1225, 287 aa 1>>>pF1KE1225 287 - 287 aa - 287 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7674+/-0.000399; mu= 13.4063+/- 0.025 mean_var=107.1896+/-21.879, 0's: 0 Z-trim(114.4): 215 B-trim: 9 in 1/52 Lambda= 0.123879 statistics sampled from 24016 (24270) to 24016 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16 Scan time: 5.150 The best scores are: opt bits E(85289) NP_001138486 (OMIM: 612601) ret finger protein-lik ( 287) 1969 362.6 4.8e-100 XP_011525217 (OMIM: 612601) PREDICTED: ret finger ( 344) 1969 362.7 5.4e-100 XP_016884391 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57 XP_016884390 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57 XP_011528600 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57 XP_011528601 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57 XP_016884389 (OMIM: 605968) PREDICTED: ret finger ( 288) 1166 219.1 7.6e-57 NP_066306 (OMIM: 605968) ret finger protein-like 1 ( 317) 1166 219.2 8.2e-57 NP_006595 (OMIM: 605970) ret finger protein-like 3 ( 288) 1145 215.4 1e-55 NP_001092005 (OMIM: 605970) ret finger protein-lik ( 317) 1145 215.4 1.1e-55 XP_016884025 (OMIM: 605969) PREDICTED: ret finger ( 288) 1104 208.1 1.7e-53 XP_016884024 (OMIM: 605969) PREDICTED: ret finger ( 288) 1104 208.1 1.7e-53 NP_001153017 (OMIM: 605969) ret finger protein-lik ( 288) 1104 208.1 1.7e-53 NP_001153018 (OMIM: 605969) ret finger protein-lik ( 288) 1104 208.1 1.7e-53 NP_006596 (OMIM: 605969) ret finger protein-like 2 ( 317) 1104 208.1 1.8e-53 NP_001091997 (OMIM: 605969) ret finger protein-lik ( 378) 1104 208.2 2e-53 XP_011528134 (OMIM: 605969) PREDICTED: ret finger ( 378) 1104 208.2 2e-53 XP_011528128 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53 XP_011528129 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53 XP_011528132 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53 XP_011528130 (OMIM: 605969) PREDICTED: ret finger ( 416) 1104 208.2 2.1e-53 NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 530 105.7 1.9e-22 NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 492 98.9 2e-20 XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 482 97.0 6e-20 XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 483 97.3 6e-20 NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 483 97.3 6e-20 NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 472 95.4 2.7e-19 NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 467 94.3 3.7e-19 NP_001184162 (OMIM: 613590) butyrophilin subfamily ( 466) 468 94.6 3.8e-19 NP_008980 (OMIM: 613590) butyrophilin subfamily 2 ( 527) 468 94.6 4.2e-19 NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 467 94.5 4.8e-19 NP_001184168 (OMIM: 613591) butyrophilin subfamily ( 313) 460 93.0 7.8e-19 XP_011512533 (OMIM: 613591) PREDICTED: butyrophili ( 313) 460 93.0 7.8e-19 NP_061008 (OMIM: 111620,111750,609017) erythroid m ( 475) 461 93.3 9.3e-19 XP_011538872 (OMIM: 111620,111750,609017) PREDICTE ( 475) 461 93.3 9.3e-19 NP_001017922 (OMIM: 111620,111750,609017) erythroi ( 475) 461 93.3 9.3e-19 XP_006710376 (OMIM: 111620,111750,609017) PREDICTE ( 475) 461 93.3 9.3e-19 NP_853509 (OMIM: 613591) butyrophilin subfamily 2 ( 407) 460 93.1 9.4e-19 XP_016865656 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 93.1 9.4e-19 XP_005248855 (OMIM: 613591) PREDICTED: butyrophili ( 407) 460 93.1 9.4e-19 XP_011512531 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 93.2 1e-18 XP_016865655 (OMIM: 613591) PREDICTED: butyrophili ( 461) 460 93.2 1e-18 XP_011512530 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18 NP_008926 (OMIM: 613591) butyrophilin subfamily 2 ( 523) 460 93.2 1.1e-18 XP_005248854 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18 NP_001184166 (OMIM: 613591) butyrophilin subfamily ( 523) 460 93.2 1.1e-18 XP_006715016 (OMIM: 613591) PREDICTED: butyrophili ( 523) 460 93.2 1.1e-18 NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 453 91.9 2.5e-18 NP_001723 (OMIM: 601610) butyrophilin subfamily 1 ( 526) 453 92.0 2.7e-18 XP_005249397 (OMIM: 601610) PREDICTED: butyrophili ( 626) 453 92.0 3e-18 >>NP_001138486 (OMIM: 612601) ret finger protein-like 4A (287 aa) initn: 1969 init1: 1969 opt: 1969 Z-score: 1917.1 bits: 362.6 E(85289): 4.8e-100 Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:1-287) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK 250 260 270 280 >>XP_011525217 (OMIM: 612601) PREDICTED: ret finger prot (344 aa) initn: 1969 init1: 1969 opt: 1969 Z-score: 1916.1 bits: 362.7 E(85289): 5.4e-100 Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 287 aa overlap (1-287:58-344) 10 20 30 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYAC :::::::::::::::::::::::::::::: XP_011 PWQAALTPDLSCPQKQLEARGETPEGETFAMAEHFKQIIRCPVCLKDLEEAVQLKCGYAC 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE1 CLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPR 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE1 MRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGR 150 160 170 180 190 200 160 170 180 190 200 210 pF1KE1 HYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HYWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVS 210 220 230 240 250 260 220 230 240 250 260 270 pF1KE1 PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSIC 270 280 290 300 310 320 280 pF1KE1 SVINPSAASAPVSSEGK ::::::::::::::::: XP_011 SVINPSAASAPVSSEGK 330 340 >>XP_016884391 (OMIM: 605968) PREDICTED: ret finger prot (288 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::. XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: : XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.:: XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: . ::: . :.:.:::: ::::....::: XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK 250 260 270 280 >>XP_016884390 (OMIM: 605968) PREDICTED: ret finger prot (288 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::. XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: : XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.:: XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: . ::: . :.:.:::: ::::....::: XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK 250 260 270 280 >>XP_011528600 (OMIM: 605968) PREDICTED: ret finger prot (288 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::. XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: : XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.:: XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: . ::: . :.:.:::: ::::....::: XP_011 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK 250 260 270 280 >>XP_011528601 (OMIM: 605968) PREDICTED: ret finger prot (288 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::. XP_011 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: XP_011 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: : XP_011 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.:: XP_011 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: . ::: . :.:.:::: ::::....::: XP_011 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK 250 260 270 280 >>XP_016884389 (OMIM: 605968) PREDICTED: ret finger prot (288 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.5 bits: 219.1 E(85289): 7.6e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: : :..:.::::::: :: ::: ::.::::. XP_016 MAALFQEASSCPVCSDYLEKPMSLECGCAVCFKCINSLQKEPHGEDLLCCCCSMVSQKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:...:. :.: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: XP_016 IRPSWQLERLASHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::.:.:.: : XP_016 GCITQNRQDLAERFDVSICILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHRKGRIHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..:.:: ::. :.:. ..:::::.: :.:. .:.:::::::.::....:... : :.:: XP_016 TTERGFWTVSLRDGSRLSASTVPLTFLFVDRKLQRVGIFLDMGMQNVSFFDAEGGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: . ::: . :.:.:::: ::::....::: XP_016 FRSVSAEEPLHLFFAPPSPPNGDKSVLSICPVINPGTTDAPVHPGEAK 250 260 270 280 >>NP_066306 (OMIM: 605968) ret finger protein-like 1 [Ho (317 aa) initn: 1166 init1: 1166 opt: 1166 Z-score: 1141.0 bits: 219.2 E(85289): 8.2e-57 Smith-Waterman score: 1166; 58.5% identity (83.3% similar) in 282 aa overlap (1-282:30-311) 10 20 30 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC :: :.. :::: ::. ..:.:: : : NP_066 MKRLSLVTTNRLSPHGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCAVC 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM ..:.::::::: :: ::: ::.::::. :.:...:. :.: :::::::::..: ::::: NP_066 FKCINSLQKEPHGEDLLCCCCSMVSQKNKIRPSWQLERLASHIKELEPKLKKILQMNPRM 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH ::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: ::: NP_066 RKFQVDMTLDADTANNFLLISDDLRSVRSGCITQNRQDLAERFDVSICILGSPRFTCGRH 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP ::::::::: ::.:::.:::.:.:.: :..:.:: ::. :.:. ..:::::.: :.:. NP_066 YWEVDVGTSTEWDLGVCRESVHRKGRIHLTTERGFWTVSLRDGSRLSASTVPLTFLFVDR 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS .:.:::::::.::....:... : :.::: . . :: . ::: . :.:.:::: NP_066 KLQRVGIFLDMGMQNVSFFDAEGGSHVYTFRSVSAEEPLHLFFAPPSPPNGDKSVLSICP 250 260 270 280 290 300 280 pF1KE1 VINPSAASAPVSSEGK ::::....::: NP_066 VINPGTTDAPVHPGEAK 310 >>NP_006595 (OMIM: 605970) ret finger protein-like 3 iso (288 aa) initn: 1145 init1: 1145 opt: 1145 Z-score: 1121.2 bits: 215.4 E(85289): 1e-55 Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDD :: :.. :::: ::. ..:.:: . ::.:.::::::: :: ::: ::.:::.. NP_006 MAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKEPHGEDLLCCCCSMVSQRNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IKPKYKLRALVSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRS :.:. .:. ::: :::::::::..: :::::::::::::.:.:::::.:.::.:::: :: NP_006 IRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLISDDLRSVRS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIVL : ..:::.. :::::...:.::.:::: :::::::::::: ::.:::.:::. .::: : NP_006 GLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYT ..: :: ::. :.:. ..:::::.: : :. .:.:::::::.::....:... .: :.:: NP_006 TTELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYT 190 200 210 220 230 240 250 260 270 280 pF1KE1 FIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSAASAPVSSEGK : . . :: :::.: . . ::..:::: ..: ....::: NP_006 FRSVSAEEPLRPFLAPSIPPNGDQGVLSICPLMNSGTTDAPVRPGEAK 250 260 270 280 >>NP_001092005 (OMIM: 605970) ret finger protein-like 3 (317 aa) initn: 1145 init1: 1145 opt: 1145 Z-score: 1120.7 bits: 215.4 E(85289): 1.1e-55 Smith-Waterman score: 1145; 57.8% identity (82.6% similar) in 282 aa overlap (1-282:30-311) 10 20 30 pF1KE1 MAEHFKQIIRCPVCLKDLEEAVQLKCGYACC :: :.. :::: ::. ..:.:: . : NP_001 MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVC 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 LQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRALVSIIKELEPKLKSVLTMNPRM :.:.::::::: :: ::: ::.:::.. :.:. .:. ::: :::::::::..: ::::: NP_001 LKCINSLQKEPHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRM 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 RKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH ::::::::.:.:::::.:.::.:::: ::: ..:::.. :::::...:.::.:::: ::: NP_001 RKFQVDMTLDADTANNFLLISDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRH 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 YWEVDVGTSQVWDVGVCKESVNRQGKIVLSSEHGFLTVGCREGKVFAASTVPMTPLWVSP ::::::::: ::.:::.:::. .::: :..: :: ::. :.:. ..:::::.: : :. NP_001 YWEVDVGTSTEWDLGVCRESVHCKGKIQLTTELGFWTVSLRDGSRLSASTVPLTFLLVDR 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 QLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS .:.:::::::.::....:... .: :.::: . . :: :::.: . . ::..:::: NP_001 KLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLRPFLAPSIPPNGDQGVLSICP 250 260 270 280 290 300 280 pF1KE1 VINPSAASAPVSSEGK ..: ....::: NP_001 LMNSGTTDAPVRPGEAK 310 287 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:34:20 2016 done: Sun Nov 6 10:34:20 2016 Total Scan time: 5.150 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]