FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9602, 197 aa 1>>>pF1KE9602 197 - 197 aa - 197 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4307+/-0.000417; mu= -0.6892+/- 0.026 mean_var=180.9964+/-35.070, 0's: 0 Z-trim(117.8): 19 B-trim: 453 in 1/56 Lambda= 0.095332 statistics sampled from 30117 (30131) to 30117 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.353), width: 16 Scan time: 6.560 The best scores are: opt bits E(85289) NP_872319 (OMIM: 609394) kinetochore protein Spc24 ( 197) 1260 184.8 7.5e-47 NP_001303961 (OMIM: 609394) kinetochore protein Sp ( 170) 1014 151.0 1e-36 NP_001303962 (OMIM: 609394) kinetochore protein Sp ( 140) 910 136.6 1.8e-32 NP_001303960 (OMIM: 609394) kinetochore protein Sp ( 175) 897 134.9 7.3e-32 XP_011526004 (OMIM: 609394) PREDICTED: kinetochore ( 138) 832 125.9 3e-29 XP_005259810 (OMIM: 609394) PREDICTED: kinetochore ( 151) 565 89.2 3.6e-18 >>NP_872319 (OMIM: 609394) kinetochore protein Spc24 iso (197 aa) initn: 1260 init1: 1260 opt: 1260 Z-score: 962.1 bits: 184.8 E(85289): 7.5e-47 Smith-Waterman score: 1260; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_872 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_872 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_872 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL 130 140 150 160 170 180 190 pF1KE9 SRKFISDYLWSLVDTEW ::::::::::::::::: NP_872 SRKFISDYLWSLVDTEW 190 >>NP_001303961 (OMIM: 609394) kinetochore protein Spc24 (170 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 780.1 bits: 151.0 E(85289): 1e-36 Smith-Waterman score: 1014; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162) 10 20 30 40 50 60 pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL :::::::::::::::::::::::::::::::::::::::::: NP_001 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGSILFGEPF 130 140 150 160 170 190 pF1KE9 SRKFISDYLWSLVDTEW >>NP_001303962 (OMIM: 609394) kinetochore protein Spc24 (140 aa) initn: 910 init1: 910 opt: 910 Z-score: 704.1 bits: 136.6 E(85289): 1.8e-32 Smith-Waterman score: 910; 100.0% identity (100.0% similar) in 140 aa overlap (58-197:1-140) 30 40 50 60 70 80 pF1KE9 RRLLGRHEQVVERLLETQDGAEKQLREILTMEKEVAQSLLNAKEQVHQGGVELQQLEAGL :::::::::::::::::::::::::::::: NP_001 MEKEVAQSLLNAKEQVHQGGVELQQLEAGL 10 20 30 90 100 110 120 130 140 pF1KE9 QEAGEEDTRLKASLLQLTRELEELKEIEADLERQEKEVDEDTTVTIPSAVYVAQLYHQVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QEAGEEDTRLKASLLQLTRELEELKEIEADLERQEKEVDEDTTVTIPSAVYVAQLYHQVS 40 50 60 70 80 90 150 160 170 180 190 pF1KE9 KIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQLSRKFISDYLWSLVDTEW :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQLSRKFISDYLWSLVDTEW 100 110 120 130 140 >>NP_001303960 (OMIM: 609394) kinetochore protein Spc24 (175 aa) initn: 905 init1: 888 opt: 897 Z-score: 693.0 bits: 134.9 E(85289): 7.3e-32 Smith-Waterman score: 897; 97.4% identity (98.7% similar) in 151 aa overlap (1-151:1-149) 10 20 30 40 50 60 pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL :::::::::::::::::::::::::. .:: NP_001 QEKEVDEDTTVTIPSAVYVAQLYHQL--LEWPQLGNQRESTYLCQACSFTSVTGWDK 130 140 150 160 170 190 pF1KE9 SRKFISDYLWSLVDTEW >>XP_011526004 (OMIM: 609394) PREDICTED: kinetochore pro (138 aa) initn: 832 init1: 832 opt: 832 Z-score: 646.2 bits: 125.9 E(85289): 3e-29 Smith-Waterman score: 832; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL ::::::::::::::::: XP_011 QEKEVDEDTTVTIPSAVS 130 >>XP_005259810 (OMIM: 609394) PREDICTED: kinetochore pro (151 aa) initn: 550 init1: 550 opt: 565 Z-score: 447.1 bits: 89.2 E(85289): 3.6e-18 Smith-Waterman score: 877; 76.6% identity (76.6% similar) in 197 aa overlap (1-197:1-151) 10 20 30 40 50 60 pF1KE9 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 EVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLER ::::::::::: ::: XP_005 EVAQSLLNAKE----------------------------------------------LER 70 130 140 150 160 170 180 pF1KE9 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWDYECEPGMVKGIHHGPSVAQPIHLDSTQL 80 90 100 110 120 130 190 pF1KE9 SRKFISDYLWSLVDTEW ::::::::::::::::: XP_005 SRKFISDYLWSLVDTEW 140 150 197 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:29:58 2016 done: Sun Nov 6 06:29:59 2016 Total Scan time: 6.560 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]