FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3678, 317 aa 1>>>pF1KE3678 317 - 317 aa - 317 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0129+/-0.000784; mu= 10.5523+/- 0.048 mean_var=154.9318+/-30.282, 0's: 0 Z-trim(114.0): 50 B-trim: 0 in 0/53 Lambda= 0.103040 statistics sampled from 14540 (14588) to 14540 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.448), width: 16 Scan time: 3.030 The best scores are: opt bits E(32554) CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19 ( 317) 2100 323.2 1.7e-88 CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15 ( 347) 984 157.3 1.5e-38 >>CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19 (317 aa) initn: 2100 init1: 2100 opt: 2100 Z-score: 1702.5 bits: 323.2 E(32554): 1.7e-88 Smith-Waterman score: 2100; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317) 10 20 30 40 50 60 pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK 250 260 270 280 290 300 310 pF1KE3 LIVRIKEILAQVASEHL ::::::::::::::::: CCDS45 LIVRIKEILAQVASEHL 310 >>CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15 (347 aa) initn: 932 init1: 858 opt: 984 Z-score: 805.4 bits: 157.3 E(32554): 1.5e-38 Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (1-312:31-345) 10 20 30 pF1KE3 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV ..: :. : ...: .. . : :: . CCDS10 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNP----EFVEDL 10 20 30 40 50 40 50 60 70 80 pF1KE3 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN .: . .:. : :.. ::.: .::: : ::.:::: : :.::.:.::::::.: CCDS10 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN 60 70 80 90 100 110 90 100 110 120 130 140 pF1KE3 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA :::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..:: CCDS10 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA 120 130 140 150 160 170 150 160 170 180 190 200 pF1KE3 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE ::. ..: :... : ... .. . .: . :.::.::::::::...:::::: CCDS10 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE3 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS ::.::: :. :::.::.::.:..:: .: :.:: .. :. :. .:::.:...::.::.: CCDS10 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS 240 250 260 270 280 290 270 280 290 300 310 pF1KE3 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL :::.:.::.:::::. :.: :: :::. : .: ..:..:. ..:.. .. CCDS10 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR 300 310 320 330 340 317 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:37:14 2016 done: Sun Nov 6 10:37:15 2016 Total Scan time: 3.030 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]