FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4017, 197 aa 1>>>pF1KE4017 197 - 197 aa - 197 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4811+/-0.000281; mu= 18.4223+/- 0.018 mean_var=61.7323+/-12.272, 0's: 0 Z-trim(119.1): 96 B-trim: 939 in 2/49 Lambda= 0.163237 statistics sampled from 32739 (32845) to 32739 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.385), width: 16 Scan time: 6.780 The best scores are: opt bits E(85289) NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 266 70.2 2.3e-12 XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 234 62.9 7.7e-10 XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 229 61.4 9.7e-10 NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 229 61.4 9.7e-10 NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 234 63.1 1e-09 NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 227 61.0 1.3e-09 NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 224 60.2 2.2e-09 NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 211 57.2 1.8e-08 NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 211 57.2 1.8e-08 NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 211 57.2 1.8e-08 NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 211 57.2 1.8e-08 NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 211 57.2 1.8e-08 NP_001287997 (OMIM: 603425) ADP-ribosylation facto ( 135) 205 55.7 4e-08 NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 206 56.4 9.3e-08 NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 206 56.5 9.6e-08 XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 206 56.5 9.6e-08 NP_001254476 (OMIM: 604699) ADP-ribosylation facto ( 201) 200 54.6 1.2e-07 NP_001254477 (OMIM: 604699) ADP-ribosylation facto ( 201) 200 54.6 1.2e-07 XP_016883065 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 200 54.6 1.2e-07 XP_011526784 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 200 54.6 1.2e-07 NP_003215 (OMIM: 604699) ADP-ribosylation factor-r ( 201) 200 54.6 1.2e-07 XP_011526785 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 200 54.6 1.2e-07 NP_001136120 (OMIM: 607691) GTP-binding protein SA ( 198) 197 53.9 1.9e-07 NP_064535 (OMIM: 607691) GTP-binding protein SAR1a ( 198) 197 53.9 1.9e-07 NP_001028675 (OMIM: 246700,607690) GTP-binding pro ( 198) 195 53.5 2.7e-07 XP_016865010 (OMIM: 246700,607690) PREDICTED: GTP- ( 198) 195 53.5 2.7e-07 NP_057187 (OMIM: 246700,607690) GTP-binding protei ( 198) 195 53.5 2.7e-07 NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 192 52.7 4.3e-07 NP_001032251 (OMIM: 608960) ADP-ribosylation facto ( 142) 189 51.9 5.6e-07 NP_817114 (OMIM: 608960) ADP-ribosylation factor-l ( 142) 189 51.9 5.6e-07 NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 189 52.0 6.6e-07 NP_001254478 (OMIM: 604699) ADP-ribosylation facto ( 173) 188 51.8 7.6e-07 NP_001128230 (OMIM: 604699) ADP-ribosylation facto ( 173) 188 51.8 7.6e-07 XP_005252458 (OMIM: 608909) PREDICTED: ADP-ribosyl ( 142) 185 51.0 1.1e-06 NP_848930 (OMIM: 608909) ADP-ribosylation factor-l ( 179) 185 51.1 1.3e-06 NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 185 51.1 1.3e-06 NP_620150 (OMIM: 616597) ADP-ribosylation factor-l ( 186) 175 48.7 6.7e-06 NP_001254475 (OMIM: 604699) ADP-ribosylation facto ( 154) 174 48.4 6.9e-06 NP_060654 (OMIM: 616596) ADP-ribosylation factor-l ( 186) 174 48.5 7.9e-06 XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 161 45.3 5.3e-05 XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 161 45.5 7.2e-05 XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 155 44.0 0.00017 NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 155 44.0 0.00017 NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 152 43.3 0.00029 NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 152 43.3 0.00029 XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 152 43.3 0.00029 NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 152 43.3 0.00029 NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 152 43.3 0.00029 XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 150 42.9 0.00042 NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 150 42.9 0.00042 >>NP_001168 (OMIM: 603425) ADP-ribosylation factor-like (181 aa) initn: 215 init1: 81 opt: 266 Z-score: 342.9 bits: 70.2 E(85289): 2.3e-12 Smith-Waterman score: 266; 30.7% identity (58.1% similar) in 179 aa overlap (20-195:14-179) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP :... :.:: :.::: .. ::: .:: NP_001 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQ----------VGEVVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQR-KITIRELGG--CMGPIWSSYYGNCRSLLFVMDASDPTQLSASC : ::.: :. .. . :. . .::: . : : ::.: ....:.:. : ... : NP_001 TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 VQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAR .:...: :.: .: .... :: :. :.. :: . . :: . : . : :: NP_001 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT---SAT 110 120 130 140 150 160 180 190 pF1KE4 EGTGLAGVLAWLQATHRAND .:::: .. :: : .. NP_001 KGTGLDEAMEWLVETLKSRQ 170 180 >>XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquitin-pr (398 aa) initn: 207 init1: 125 opt: 234 Z-score: 297.7 bits: 62.9 E(85289): 7.7e-10 Smith-Waterman score: 234; 30.9% identity (56.7% similar) in 178 aa overlap (16-189:220-385) 10 20 30 40 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGM-CLLLGATGVGKTLLVKRLQ :: : : . . :: :.::: .. .:. XP_005 TLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLK 190 200 210 220 230 240 50 60 70 80 90 100 pF1KE4 EVSSRDGKGDLGEPPPTRPTVGTNLTDIVAQR-KITIRELGGC--MGPIWSSYYGNCRSL . .. .: : :.: :. . . :.:: ..:: . :.:. :: : ... XP_005 Q-------DEFMQPIP---TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAV 250 260 270 280 290 110 120 130 140 150 160 pF1KE4 LFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDI .::.:.: ..: . .: ::. ..: .: .::. :: :. .:.::. :. : . XP_005 VFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 300 310 320 330 340 350 170 180 190 pF1KE4 IACAKQNITTAEISAREGTGLAGVLAWLQATHRAND : .. .:: : :: : :: XP_005 --CCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA 360 370 380 390 >>XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosylatio (181 aa) initn: 151 init1: 79 opt: 229 Z-score: 295.8 bits: 61.4 E(85289): 9.7e-10 Smith-Waterman score: 229; 29.1% identity (56.6% similar) in 182 aa overlap (12-189:6-173) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. : :. :..: ..::: .. .:. ::: XP_005 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.: :. : ..:.::.:..: ... . XP_005 TIPTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .:. .:. ..: .: .:.. :: ::: :.. :. . . : .. ..: : XP_005 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RHRNWYIQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND : :: : :: XP_005 TSGDGLYEGLDWLANQLKNKK 170 180 >>NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 [Ho (181 aa) initn: 151 init1: 79 opt: 229 Z-score: 295.8 bits: 61.4 E(85289): 9.7e-10 Smith-Waterman score: 229; 29.1% identity (56.6% similar) in 182 aa overlap (12-189:6-173) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. : :. :..: ..::: .. .:. ::: NP_001 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.: :. : ..:.::.:..: ... . NP_001 TIPTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .:. .:. ..: .: .:.. :: ::: :.. :. . . : .. ..: : NP_001 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RHRNWYIQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND : :: : :: NP_001 TSGDGLYEGLDWLANQLKNKK 170 180 >>NP_001647 (OMIM: 601747) E3 ubiquitin-protein ligase T (574 aa) initn: 189 init1: 125 opt: 234 Z-score: 295.6 bits: 63.1 E(85289): 1e-09 Smith-Waterman score: 234; 30.9% identity (56.7% similar) in 178 aa overlap (16-189:396-561) 10 20 30 40 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGM-CLLLGATGVGKTLLVKRLQ :: : : . . :: :.::: .. .:. NP_001 TLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLK 370 380 390 400 410 420 50 60 70 80 90 100 pF1KE4 EVSSRDGKGDLGEPPPTRPTVGTNLTDIVAQR-KITIRELGGC--MGPIWSSYYGNCRSL . .. .: : :.: :. . . :.:: ..:: . :.:. :: : ... NP_001 Q-------DEFMQPIP---TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAV 430 440 450 460 470 110 120 130 140 150 160 pF1KE4 LFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDI .::.:.: ..: . .: ::. ..: .: .::. :: :. .:.::. :. : . NP_001 VFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 480 490 500 510 520 530 170 180 190 pF1KE4 IACAKQNITTAEISAREGTGLAGVLAWLQATHRAND : .. .:: : :: : :: NP_001 --CCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVLDVA 540 550 560 570 >>NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 [Ho (180 aa) initn: 155 init1: 74 opt: 227 Z-score: 293.3 bits: 61.0 E(85289): 1.3e-09 Smith-Waterman score: 227; 29.9% identity (58.0% similar) in 174 aa overlap (20-189:14-173) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. :..: ..::: .. .:. ::: NP_001 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.:. :. : ..:.::.:..: ... NP_001 TIPTIGFNV-ETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEV 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .: .: ...: .: .:.. :: ::: :. :: . . : .. ... . : NP_001 ADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL---RNRTWYVQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND .:::: : :: NP_001 TQGTGLYEGLDWLSNELSKR 170 180 >>NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 [Ho (175 aa) initn: 211 init1: 124 opt: 224 Z-score: 289.6 bits: 60.2 E(85289): 2.2e-09 Smith-Waterman score: 224; 27.9% identity (57.5% similar) in 179 aa overlap (20-195:10-175) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. :.:: ..::: .. .:. ::. NP_001 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLK----------LGQSVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQR-KITIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSASC : :::: :. .. . :... ..:: . :.: :: . ..:.::.: .: ... . NP_001 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 VQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAR .: ... ... .: .::. :: ::: :. .:.. . : : .: . : NP_001 QELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI---RDRNWYVQPSCAT 110 120 130 140 150 180 190 pF1KE4 EGTGLAGVLAWLQATHRAND : :: :.:: ..... NP_001 SGDGLYEGLTWLTSNYKS 160 170 >>NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 [Ho (180 aa) initn: 97 init1: 48 opt: 211 Z-score: 272.9 bits: 57.2 E(85289): 1.8e-08 Smith-Waterman score: 230; 29.3% identity (57.5% similar) in 174 aa overlap (20-189:14-173) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. :..: ..::: .. .:. ::: NP_001 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.: :. : ..:.::.:..: ... : NP_001 TIPTIGFNV-ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .: .:. ..: .: .:.. :: :.: : . :. . . : . ... . : NP_001 ADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL---RSRTWYVQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND .:::: : :: NP_001 TQGTGLYDGLDWLSHELSKR 170 180 >>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa) initn: 116 init1: 48 opt: 211 Z-score: 272.9 bits: 57.2 E(85289): 1.8e-08 Smith-Waterman score: 229; 29.1% identity (57.0% similar) in 179 aa overlap (20-194:14-178) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. :..: ..::: .. .:. ::: NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.: :. : ..:.::.:..: ... . NP_001 TIPTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .:. .:. ..: .: .:.. :: ::: :.. :. . . : .. ..: : NP_001 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RHRNWYIQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND : :: : ::. : NP_001 TSGDGLYEGLDWLSNQLRNQK 170 180 >>NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 [Ho (181 aa) initn: 116 init1: 48 opt: 211 Z-score: 272.9 bits: 57.2 E(85289): 1.8e-08 Smith-Waterman score: 229; 29.1% identity (57.0% similar) in 179 aa overlap (20-194:14-178) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP : :. :..: ..::: .. .:. ::: NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLK----------LGEIVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQRKI--TIRELGGC--MGPIWSSYYGNCRSLLFVMDASDPTQLSAS : ::.: :. . : ..: :. ..:: . :.: :. : ..:.::.:..: ... . NP_001 TIPTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 CVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISA .:. .:. ..: .: .:.. :: ::: :.. :. . . : .. ..: : NP_001 REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL---RHRNWYIQATCA 110 120 130 140 150 160 180 190 pF1KE4 REGTGLAGVLAWLQATHRAND : :: : ::. : NP_001 TSGDGLYEGLDWLSNQLRNQK 170 180 197 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:33:21 2016 done: Sun Nov 6 03:33:22 2016 Total Scan time: 6.780 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]