FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4017, 197 aa 1>>>pF1KE4017 197 - 197 aa - 197 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7175+/-0.000636; mu= 16.8983+/- 0.039 mean_var=62.4421+/-12.591, 0's: 0 Z-trim(112.0): 40 B-trim: 898 in 2/48 Lambda= 0.162306 statistics sampled from 12755 (12800) to 12755 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.393), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS45813.1 ARL16 gene_id:339231|Hs108|chr17 ( 197) 1290 309.7 7.5e-85 CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 266 69.9 1.1e-12 >>CCDS45813.1 ARL16 gene_id:339231|Hs108|chr17 (197 aa) initn: 1290 init1: 1290 opt: 1290 Z-score: 1636.8 bits: 309.7 E(32554): 7.5e-85 Smith-Waterman score: 1290; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TRPTVGTNLTDIVAQRKITIRELGGCMGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAREGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAREGT 130 140 150 160 170 180 190 pF1KE4 GLAGVLAWLQATHRAND ::::::::::::::::: CCDS45 GLAGVLAWLQATHRAND 190 >>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa) initn: 215 init1: 81 opt: 266 Z-score: 341.5 bits: 69.9 E(32554): 1.1e-12 Smith-Waterman score: 266; 30.7% identity (58.1% similar) in 179 aa overlap (20-195:14-179) 10 20 30 40 50 60 pF1KE4 MRVAGGRALSRGAELRVPGGAKHGMCLLLGATGVGKTLLVKRLQEVSSRDGKGDLGEPPP :... :.:: :.::: .. ::: .:: CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQ----------VGEVVT 10 20 30 40 70 80 90 100 110 pF1KE4 TRPTVGTNLTDIVAQR-KITIRELGG--CMGPIWSSYYGNCRSLLFVMDASDPTQLSASC : ::.: :. .. . :. . .::: . : : ::.: ....:.:. : ... : CCDS44 TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE4 VQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIRLPDIIACAKQNITTAEISAR .:...: :.: .: .... :: :. :.. :: . . :: . : . : :: CCDS44 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT---SAT 110 120 130 140 150 160 180 190 pF1KE4 EGTGLAGVLAWLQATHRAND .:::: .. :: : .. CCDS44 KGTGLDEAMEWLVETLKSRQ 170 180 197 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:33:21 2016 done: Sun Nov 6 03:33:21 2016 Total Scan time: 2.010 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]