FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5820, 531 aa 1>>>pF1KB5820 531 - 531 aa - 531 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.5915+/-0.000441; mu= -2.2421+/- 0.027 mean_var=466.0510+/-96.537, 0's: 0 Z-trim(123.0): 12 B-trim: 785 in 1/60 Lambda= 0.059410 statistics sampled from 41947 (41962) to 41947 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.492), width: 16 Scan time: 11.760 The best scores are: opt bits E(85289) NP_001091896 (OMIM: 601736) SWI/SNF-related matrix ( 531) 3639 326.4 1.4e-88 NP_001317369 (OMIM: 601736) SWI/SNF-related matrix ( 483) 3119 281.7 3.4e-75 NP_001317368 (OMIM: 601736) SWI/SNF-related matrix ( 456) 3084 278.7 2.6e-74 NP_003067 (OMIM: 601735) SWI/SNF-related matrix-as ( 515) 2164 199.9 1.5e-50 NP_003069 (OMIM: 601737) SWI/SNF-related matrix-as ( 470) 1855 173.4 1.4e-42 NP_001003802 (OMIM: 601737) SWI/SNF-related matrix ( 470) 1855 173.4 1.4e-42 NP_001003801 (OMIM: 601737) SWI/SNF-related matrix ( 483) 1842 172.3 3e-42 XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 381) 1686 158.8 2.7e-38 NP_620710 (OMIM: 601735) SWI/SNF-related matrix-as ( 474) 1688 159.1 2.8e-38 XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 318) 1606 151.8 2.8e-36 XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 474) 1560 148.1 5.6e-35 XP_011536997 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 265) 806 83.2 1.1e-15 >>NP_001091896 (OMIM: 601736) SWI/SNF-related matrix-ass (531 aa) initn: 3639 init1: 3639 opt: 3639 Z-score: 1711.4 bits: 326.4 E(85289): 1.4e-88 Smith-Waterman score: 3639; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 430 440 450 460 470 480 490 500 510 520 530 pF1KB5 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 490 500 510 520 530 >>NP_001317369 (OMIM: 601736) SWI/SNF-related matrix-ass (483 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 1471.0 bits: 281.7 E(85289): 3.4e-75 Smith-Waterman score: 3119; 99.6% identity (99.8% similar) in 463 aa overlap (69-531:21-483) 40 50 60 70 80 90 pF1KB5 GPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG :. ::::::::::::::::::::::::::: NP_001 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFG 10 20 30 40 50 100 110 120 130 140 150 pF1KB5 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA 60 70 80 90 100 110 160 170 180 190 200 210 pF1KB5 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP 120 130 140 150 160 170 220 230 240 250 260 270 pF1KB5 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP 180 190 200 210 220 230 280 290 300 310 320 330 pF1KB5 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY 240 250 260 270 280 290 340 350 360 370 380 390 pF1KB5 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN 300 310 320 330 340 350 400 410 420 430 440 450 pF1KB5 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML 360 370 380 390 400 410 460 470 480 490 500 510 pF1KB5 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR 420 430 440 450 460 470 520 530 pF1KB5 RQELEQVLGIRLT ::::::::::::: NP_001 RQELEQVLGIRLT 480 >>NP_001317368 (OMIM: 601736) SWI/SNF-related matrix-ass (456 aa) initn: 3084 init1: 3084 opt: 3084 Z-score: 1455.1 bits: 278.7 E(85289): 2.6e-74 Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 456 aa overlap (76-531:1-456) 50 60 70 80 90 100 pF1KB5 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP :::::::::::::::::::::::::::::: NP_001 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP 10 20 30 110 120 130 140 150 160 pF1KB5 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF 40 50 60 70 80 90 170 180 190 200 210 220 pF1KB5 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD 100 110 120 130 140 150 230 240 250 260 270 280 pF1KB5 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG 160 170 180 190 200 210 290 300 310 320 330 340 pF1KB5 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ 220 230 240 250 260 270 350 360 370 380 390 400 pF1KB5 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC 280 290 300 310 320 330 410 420 430 440 450 460 pF1KB5 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ 340 350 360 370 380 390 470 480 490 500 510 520 pF1KB5 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV 400 410 420 430 440 450 530 pF1KB5 LGIRLT :::::: NP_001 LGIRLT >>NP_003067 (OMIM: 601735) SWI/SNF-related matrix-associ (515 aa) initn: 2222 init1: 1539 opt: 2164 Z-score: 1028.3 bits: 199.9 E(85289): 1.5e-50 Smith-Waterman score: 2208; 63.8% identity (80.0% similar) in 544 aa overlap (1-531:1-515) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .: NP_003 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR 10 20 30 40 50 70 80 90 100 110 pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL :: :.: : :::: ::.:: : ..:::. .:. .:::. . :: ::: NP_003 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP 60 70 80 90 100 120 130 140 150 160 170 pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR : : . .: :. :..:::::.::::::::::::::::::::::::::::: : NP_003 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV ::..::::.:.:. :::::::.:::::.:.:... :. :: :::::::: NP_003 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV 170 180 190 200 210 240 250 260 270 280 pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ ::.::.: .:::::::::::::::::::.::::::::::::: ::::::::: NP_003 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG ::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..::: NP_003 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD ::::.. :..:..::: :..:::::..: .::. :.::.::::::::::::::::::: NP_003 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD 340 350 360 370 380 390 410 420 430 440 450 460 pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF ::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: : NP_003 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF 400 410 420 430 440 450 470 480 490 500 510 520 pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG :..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.:: NP_003 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG 460 470 480 490 500 510 530 pF1KB5 IRLT :: : NP_003 IRNT >>NP_003069 (OMIM: 601737) SWI/SNF-related matrix-associ (470 aa) initn: 2197 init1: 1676 opt: 1855 Z-score: 885.6 bits: 173.4 E(85289): 1.4e-42 Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470) 40 50 60 70 80 90 pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP : : . ::::: : ::: : .::: NP_003 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP 10 20 30 100 110 120 130 140 pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD :::. .. .:::. :. :.: ::: : ::: : ::. :. ::::::: NP_003 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF :.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.:::::: NP_003 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD .:.: .. :: :. .:::::::::::::::::::::::::::::::::: NP_003 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD 160 170 180 190 200 270 280 290 300 310 320 pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL :.::::::::::::: :::::::::::::::::.:.::::::::.::::.:::::::::: NP_003 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL 210 220 230 240 250 260 330 340 350 360 370 380 pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL :.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: NP_003 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL 270 280 290 300 310 320 390 400 410 420 430 440 pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH ::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: ::: NP_003 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH 330 340 350 360 370 380 450 460 470 480 490 500 pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP :::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::: NP_003 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP 390 400 410 420 430 440 510 520 530 pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT :.::::.:... :.::::::::: : .: : NP_003 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT 450 460 470 >>NP_001003802 (OMIM: 601737) SWI/SNF-related matrix-ass (470 aa) initn: 2197 init1: 1676 opt: 1855 Z-score: 885.6 bits: 173.4 E(85289): 1.4e-42 Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470) 40 50 60 70 80 90 pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP : : . ::::: : ::: : .::: NP_001 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP 10 20 30 100 110 120 130 140 pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD :::. .. .:::. :. :.: ::: : ::: : ::. :. ::::::: NP_001 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF :.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.:::::: NP_001 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD .:.: .. :: :. .:::::::::::::::::::::::::::::::::: NP_001 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD 160 170 180 190 200 270 280 290 300 310 320 pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL :.::::::::::::: :::::::::::::::::.:.::::::::.::::.:::::::::: NP_001 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL 210 220 230 240 250 260 330 340 350 360 370 380 pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL :.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: NP_001 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL 270 280 290 300 310 320 390 400 410 420 430 440 pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH ::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: ::: NP_001 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH 330 340 350 360 370 380 450 460 470 480 490 500 pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP :::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::: NP_001 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP 390 400 410 420 430 440 510 520 530 pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT :.::::.:... :.::::::::: : .: : NP_001 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT 450 460 470 >>NP_001003801 (OMIM: 601737) SWI/SNF-related matrix-ass (483 aa) initn: 2191 init1: 1676 opt: 1842 Z-score: 879.5 bits: 172.3 E(85289): 3e-42 Smith-Waterman score: 2246; 71.3% identity (85.5% similar) in 470 aa overlap (73-531:27-483) 50 60 70 80 90 100 pF1KB5 RGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP :::: : ::: : .::: :::. .. NP_001 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPP-GSPYMGSPA 10 20 30 40 50 110 120 130 140 150 pF1KB5 LRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIREL .:::. :. :.: ::: : ::: : ::. :. ::::::::.:::::::: NP_001 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIREL 60 70 80 90 100 110 160 170 180 190 200 210 pF1KB5 VPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DS ::::::::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. :: NP_001 VPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDS 120 130 140 150 160 170 220 230 240 250 260 270 pF1KB5 AGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHL :. .:::::::::::::::::::::::::::::::::::.:::::::: NP_001 DGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHL 180 190 200 210 220 280 290 300 310 320 330 pF1KB5 VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAI ::::: :::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.:: NP_001 VEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAI 230 240 250 260 270 280 340 350 360 370 380 390 pF1KB5 MQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINH .:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: :::::::: NP_001 VQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINH 290 300 310 320 330 340 400 410 420 430 440 450 pF1KB5 VISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLK ::::::.::::::::::::::..:::.:::.:: ::.:::::..:: ::::::::::::: NP_001 VISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLK 350 360 370 380 390 400 460 470 480 490 500 510 pF1KB5 TQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHI ::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:.. NP_001 IQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYF 410 420 430 440 450 460 520 530 pF1KB5 FAKVQQRRQELEQVLGIRLT . :.::::::::: : .: : NP_001 YCKIQQRRQELEQSLVVRNT 470 480 >>XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-related (381 aa) initn: 2069 init1: 1676 opt: 1686 Z-score: 808.4 bits: 158.8 E(85289): 2.7e-38 Smith-Waterman score: 2035; 76.1% identity (90.6% similar) in 393 aa overlap (140-531:1-381) 110 120 130 140 150 160 pF1KB5 TMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKL ::::.::::::::::::::::::::::::: XP_011 MADKILPQRIRELVPESQAYMDLLAFERKL 10 20 30 170 180 190 200 210 220 pF1KB5 DQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVA :::: :::..::::.:.:. ::::::.::::::.:.: .. :: :. .: XP_011 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IA 40 50 60 70 230 240 250 260 270 280 pF1KB5 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQV ::::::::::::::::::::::::::::::::::.::::::::::::: ::::::::::: XP_011 SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV 80 90 100 110 120 130 290 300 310 320 330 340 pF1KB5 KRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGH ::::::.:.::::::::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.: XP_011 KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH 140 150 160 170 180 190 350 360 370 380 390 400 pF1KB5 EREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDI ..:::: ..::.:::.: ::.:::::..:..:: ::::::::::::::.:::::::::: XP_011 DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI 200 210 220 230 240 250 410 420 430 440 450 460 pF1KB5 DVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI ::::..:::.:::.:: ::.:::::..:: ::::::::::::: ::::::::: ::. .. XP_011 DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV 260 270 280 290 300 310 470 480 490 500 510 520 pF1KB5 QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGI :. :::: ::::..::: ::::::::: ::::::.::::.:... :.::::::::: : . XP_011 QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV 320 330 340 350 360 370 530 pF1KB5 RLT : : XP_011 RNT 380 >>NP_620710 (OMIM: 601735) SWI/SNF-related matrix-associ (474 aa) initn: 1990 init1: 1056 opt: 1688 Z-score: 808.2 bits: 159.1 E(85289): 2.8e-38 Smith-Waterman score: 1899; 57.9% identity (73.0% similar) in 544 aa overlap (1-531:1-474) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .: NP_620 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR 10 20 30 40 50 70 80 90 100 110 pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL :: :.: : :::: ::.:: : ..:::. .:. .:::. . :: ::: NP_620 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP 60 70 80 90 100 120 130 140 150 160 170 pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR : : . .: :. :..:::::.::::::::::::::::::::::::::::: : NP_620 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV ::..::::.:.:. :::::::.:::::.:.:... :. :: :::::::: NP_620 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV 170 180 190 200 210 240 250 260 270 280 pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ ::.::.: .:::::::::::::::::::.::::::::::::: ::::::::: NP_620 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG ::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..::: NP_620 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD ::::.. :..:..::: :..:::::..: .::. :.::.::::::::::::::::::: NP_620 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD 340 350 360 370 380 390 410 420 430 440 450 460 pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF ::::::: ::.::..:: ::..:::::.:: : NP_620 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKT--------------------------- 400 410 420 470 480 490 500 510 520 pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG .:::.::::::::: :: :::::::: :....:::::::::::.:: NP_620 --------------MTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG 430 440 450 460 470 530 pF1KB5 IRLT :: : NP_620 IRNT >>XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-related (318 aa) initn: 1606 init1: 1582 opt: 1606 Z-score: 772.2 bits: 151.8 E(85289): 2.8e-36 Smith-Waterman score: 1606; 73.6% identity (89.6% similar) in 318 aa overlap (214-531:6-318) 190 200 210 220 230 240 pF1KB5 IKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS ::. : :. : . .:: . : .. :: XP_016 MLRIPTAALPPGS-YGWRGSSWMMYVPAQ----PS 10 20 30 250 260 270 280 290 300 pF1KB5 KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLM :::::::::::::::::::.::::::::::::: :::::::::::::::::.:.:::::: XP_016 KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLM 40 50 60 70 80 90 310 320 330 340 350 360 pF1KB5 LDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF ::.::::.:::::::::::.:::.:.::.:::: :.: :.:::.:..:::: ..::.::: XP_016 LDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF 100 110 120 130 140 150 370 380 390 400 410 420 pF1KB5 SCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNF .: ::.:::::..:..:: ::::::::::::::.::::::::::::::..:::.:::.: XP_016 DCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSF 160 170 180 190 200 210 430 440 450 460 470 480 pF1KB5 LASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT : ::.:::::..:: ::::::::::::: ::::::::: ::. ..:. :::: ::::..: XP_016 LLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT 220 230 240 250 260 270 490 500 510 520 530 pF1KB5 DVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT :: ::::::::: ::::::.::::.:... :.::::::::: : .: : XP_016 DVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 280 290 300 310 531 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:37:56 2016 done: Sun Nov 6 10:37:58 2016 Total Scan time: 11.760 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]