FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5820, 531 aa 1>>>pF1KB5820 531 - 531 aa - 531 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.7821+/-0.00106; mu= -3.1370+/- 0.064 mean_var=420.8938+/-86.228, 0's: 0 Z-trim(115.5): 20 B-trim: 170 in 1/53 Lambda= 0.062516 statistics sampled from 16036 (16049) to 16036 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.493), width: 16 Scan time: 4.020 The best scores are: opt bits E(32554) CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 531) 3639 342.3 8.1e-94 CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 483) 3119 295.4 9.9e-80 CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 456) 3084 292.2 8.5e-79 CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 515) 2164 209.3 8.8e-54 CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 470) 1855 181.4 2e-45 CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 483) 1842 180.2 4.7e-45 CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 474) 1688 166.3 7e-41 >>CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 (531 aa) initn: 3639 init1: 3639 opt: 3639 Z-score: 1797.8 bits: 342.3 E(32554): 8.1e-94 Smith-Waterman score: 3639; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 430 440 450 460 470 480 490 500 510 520 530 pF1KB5 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 490 500 510 520 530 >>CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 (483 aa) initn: 3119 init1: 3119 opt: 3119 Z-score: 1544.9 bits: 295.4 E(32554): 9.9e-80 Smith-Waterman score: 3119; 99.6% identity (99.8% similar) in 463 aa overlap (69-531:21-483) 40 50 60 70 80 90 pF1KB5 GPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG :. ::::::::::::::::::::::::::: CCDS82 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFG 10 20 30 40 50 100 110 120 130 140 150 pF1KB5 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA 60 70 80 90 100 110 160 170 180 190 200 210 pF1KB5 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP 120 130 140 150 160 170 220 230 240 250 260 270 pF1KB5 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP 180 190 200 210 220 230 280 290 300 310 320 330 pF1KB5 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY 240 250 260 270 280 290 340 350 360 370 380 390 pF1KB5 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN 300 310 320 330 340 350 400 410 420 430 440 450 pF1KB5 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML 360 370 380 390 400 410 460 470 480 490 500 510 pF1KB5 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR 420 430 440 450 460 470 520 530 pF1KB5 RQELEQVLGIRLT ::::::::::::: CCDS82 RQELEQVLGIRLT 480 >>CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 (456 aa) initn: 3084 init1: 3084 opt: 3084 Z-score: 1528.1 bits: 292.2 E(32554): 8.5e-79 Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 456 aa overlap (76-531:1-456) 50 60 70 80 90 100 pF1KB5 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP :::::::::::::::::::::::::::::: CCDS82 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP 10 20 30 110 120 130 140 150 160 pF1KB5 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF 40 50 60 70 80 90 170 180 190 200 210 220 pF1KB5 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD 100 110 120 130 140 150 230 240 250 260 270 280 pF1KB5 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG 160 170 180 190 200 210 290 300 310 320 330 340 pF1KB5 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ 220 230 240 250 260 270 350 360 370 380 390 400 pF1KB5 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC 280 290 300 310 320 330 410 420 430 440 450 460 pF1KB5 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ 340 350 360 370 380 390 470 480 490 500 510 520 pF1KB5 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV 400 410 420 430 440 450 530 pF1KB5 LGIRLT :::::: CCDS82 LGIRLT >>CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 (515 aa) initn: 2222 init1: 1539 opt: 2164 Z-score: 1079.0 bits: 209.3 E(32554): 8.8e-54 Smith-Waterman score: 2208; 63.8% identity (80.0% similar) in 544 aa overlap (1-531:1-515) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .: CCDS87 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR 10 20 30 40 50 70 80 90 100 110 pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL :: :.: : :::: ::.:: : ..:::. .:. .:::. . :: ::: CCDS87 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP 60 70 80 90 100 120 130 140 150 160 170 pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR : : . .: :. :..:::::.::::::::::::::::::::::::::::: : CCDS87 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV ::..::::.:.:. :::::::.:::::.:.:... :. :: :::::::: CCDS87 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV 170 180 190 200 210 240 250 260 270 280 pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ ::.::.: .:::::::::::::::::::.::::::::::::: ::::::::: CCDS87 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG ::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..::: CCDS87 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD ::::.. :..:..::: :..:::::..: .::. :.::.::::::::::::::::::: CCDS87 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD 340 350 360 370 380 390 410 420 430 440 450 460 pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF ::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: : CCDS87 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF 400 410 420 430 440 450 470 480 490 500 510 520 pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG :..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.:: CCDS87 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG 460 470 480 490 500 510 530 pF1KB5 IRLT :: : CCDS87 IRNT >>CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 (470 aa) initn: 2197 init1: 1676 opt: 1855 Z-score: 928.9 bits: 181.4 E(32554): 2e-45 Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470) 40 50 60 70 80 90 pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP : : . ::::: : ::: : .::: CCDS59 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP 10 20 30 100 110 120 130 140 pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD :::. .. .:::. :. :.: ::: : ::: : ::. :. ::::::: CCDS59 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF :.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.:::::: CCDS59 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD .:.: .. :: :. .:::::::::::::::::::::::::::::::::: CCDS59 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD 160 170 180 190 200 270 280 290 300 310 320 pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL :.::::::::::::: :::::::::::::::::.:.::::::::.::::.:::::::::: CCDS59 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL 210 220 230 240 250 260 330 340 350 360 370 380 pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL :.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: CCDS59 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL 270 280 290 300 310 320 390 400 410 420 430 440 pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH ::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: ::: CCDS59 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH 330 340 350 360 370 380 450 460 470 480 490 500 pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP :::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::: CCDS59 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP 390 400 410 420 430 440 510 520 530 pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT :.::::.:... :.::::::::: : .: : CCDS59 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT 450 460 470 >>CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 (483 aa) initn: 2191 init1: 1676 opt: 1842 Z-score: 922.4 bits: 180.2 E(32554): 4.7e-45 Smith-Waterman score: 2246; 71.3% identity (85.5% similar) in 470 aa overlap (73-531:27-483) 50 60 70 80 90 100 pF1KB5 RGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP :::: : ::: : .::: :::. .. CCDS34 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPP-GSPYMGSPA 10 20 30 40 50 110 120 130 140 150 pF1KB5 LRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIREL .:::. :. :.: ::: : ::: : ::. :. ::::::::.:::::::: CCDS34 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIREL 60 70 80 90 100 110 160 170 180 190 200 210 pF1KB5 VPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DS ::::::::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. :: CCDS34 VPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDS 120 130 140 150 160 170 220 230 240 250 260 270 pF1KB5 AGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHL :. .:::::::::::::::::::::::::::::::::::.:::::::: CCDS34 DGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHL 180 190 200 210 220 280 290 300 310 320 330 pF1KB5 VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAI ::::: :::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.:: CCDS34 VEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAI 230 240 250 260 270 280 340 350 360 370 380 390 pF1KB5 MQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINH .:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: :::::::: CCDS34 VQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINH 290 300 310 320 330 340 400 410 420 430 440 450 pF1KB5 VISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLK ::::::.::::::::::::::..:::.:::.:: ::.:::::..:: ::::::::::::: CCDS34 VISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLK 350 360 370 380 390 400 460 470 480 490 500 510 pF1KB5 TQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHI ::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:.. CCDS34 IQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYF 410 420 430 440 450 460 520 530 pF1KB5 FAKVQQRRQELEQVLGIRLT . :.::::::::: : .: : CCDS34 YCKIQQRRQELEQSLVVRNT 470 480 >>CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 (474 aa) initn: 1990 init1: 1056 opt: 1688 Z-score: 847.4 bits: 166.3 E(32554): 7e-41 Smith-Waterman score: 1899; 57.9% identity (73.0% similar) in 544 aa overlap (1-531:1-474) 10 20 30 40 50 60 pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR :..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .: CCDS87 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR 10 20 30 40 50 70 80 90 100 110 pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL :: :.: : :::: ::.:: : ..:::. .:. .:::. . :: ::: CCDS87 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP 60 70 80 90 100 120 130 140 150 160 170 pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR : : . .: :. :..:::::.::::::::::::::::::::::::::::: : CCDS87 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV ::..::::.:.:. :::::::.:::::.:.:... :. :: :::::::: CCDS87 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV 170 180 190 200 210 240 250 260 270 280 pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ ::.::.: .:::::::::::::::::::.::::::::::::: ::::::::: CCDS87 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ 220 230 240 250 260 270 290 300 310 320 330 340 pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG ::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..::: CCDS87 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 280 290 300 310 320 330 350 360 370 380 390 400 pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD ::::.. :..:..::: :..:::::..: .::. :.::.::::::::::::::::::: CCDS87 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD 340 350 360 370 380 390 410 420 430 440 450 460 pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF ::::::: ::.::..:: ::..:::::.:: : CCDS87 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKT--------------------------- 400 410 420 470 480 490 500 510 520 pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG .:::.::::::::: :: :::::::: :....:::::::::::.:: CCDS87 --------------MTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG 430 440 450 460 470 530 pF1KB5 IRLT :: : CCDS87 IRNT 531 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:37:56 2016 done: Sun Nov 6 10:37:56 2016 Total Scan time: 4.020 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]