FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9681, 121 aa
  1>>>pF1KE9681 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7601+/-0.000351; mu= 9.5189+/- 0.022
 mean_var=94.7451+/-19.069, 0's: 0 Z-trim(114.6): 4  B-trim: 0 in 0/55
 Lambda= 0.131764
 statistics sampled from 24502 (24506) to 24502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.287), width:  16
 Scan time:  3.180

The best scores are:                                      opt bits E(85289)
NP_872426 (OMIM: 616674) spindle and kinetochore-a ( 121)  763 154.5   4e-38
NP_001317328 (OMIM: 616674) spindle and kinetochor ( 109)  620 127.2 5.6e-30


>>NP_872426 (OMIM: 616674) spindle and kinetochore-assoc  (121 aa)
 initn: 763 init1: 763 opt: 763  Z-score: 805.4  bits: 154.5 E(85289): 4e-38
Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE9 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
               70        80        90       100       110       120

        
pF1KE9 L
       :
NP_872 L
        

>>NP_001317328 (OMIM: 616674) spindle and kinetochore-as  (109 aa)
 initn: 620 init1: 620 opt: 620  Z-score: 659.1  bits: 127.2 E(85289): 5.6e-30
Smith-Waterman score: 620; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE9 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPD
       :::::::::::::::::::::::::::::::::::::::.                    
NP_001 YARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLEVMLSVDSCHH           
               70        80        90       100                    

        
pF1KE9 L




121 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:30:35 2016 done: Tue Nov  8 10:30:35 2016
 Total Scan time:  3.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]