FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6688, 235 aa
  1>>>pF1KE6688 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2748+/-0.000335; mu= -0.3138+/- 0.021
 mean_var=324.2118+/-66.311, 0's: 0 Z-trim(126.0): 10  B-trim: 2652 in 1/59
 Lambda= 0.071229
 statistics sampled from 50867 (50884) to 50867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.597), width:  16
 Scan time:  7.130

The best scores are:                                      opt bits E(85289)
NP_001157877 (OMIM: 607539,609432,615416) class A  ( 235) 1657 182.4 5.7e-46


>>NP_001157877 (OMIM: 607539,609432,615416) class A basi  (235 aa)
 initn: 1657 init1: 1657 opt: 1657  Z-score: 946.3  bits: 182.4 E(85289): 5.7e-46
Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE6 MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE6 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS
              190       200       210       220       230     




235 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:25:24 2016 done: Tue Nov  8 15:25:25 2016
 Total Scan time:  7.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]