Result of FASTA (ccds) for
pFN21AE5794
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5794, 689 aa
1>>>pF1KE5794 689 - 689 aa - 689 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0218+/-0.00101; mu= -1.0543+/- 0.060
mean_var=272.0470+/-57.054, 0's: 0 Z-trim(114.1): 28 B-trim: 407 in 1/50
Lambda= 0.077759
statistics sampled from 14662 (14678) to 14662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.451), width: 16
Scan time: 3.840
The best scores are: opt bits E(32554)
CCDS45523.1 ATXN1L gene_id:342371|Hs108|chr16 ( 689) 4660 536.4 5.3e-152
CCDS34342.1 ATXN1 gene_id:6310|Hs108|chr6 ( 815) 579 78.6 3.9e-14
>>CCDS45523.1 ATXN1L gene_id:342371|Hs108|chr16 (689 aa)
initn: 4660 init1: 4660 opt: 4660 Z-score: 2842.4 bits: 536.4 E(32554): 5.3e-152
Smith-Waterman score: 4660; 100.0% identity (100.0% similar) in 689 aa overlap (1-689:1-689)
10 20 30 40 50 60
pF1KE5 MKPVHERSQECLPPKKRDLPVTSEDMGRTTSCSTNHTPSSDASEWSRGVVVAGQSQAGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKPVHERSQECLPPKKRDLPVTSEDMGRTTSCSTNHTPSSDASEWSRGVVVAGQSQAGAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VSLGGDGAEAITGLTVDQYGMLYKVAVPPATFSPTGLPSVVNMSPLPPTFNVASSLIQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VSLGGDGAEAITGLTVDQYGMLYKVAVPPATFSPTGLPSVVNMSPLPPTFNVASSLIQHP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GIHYPPLHYAQLPSTSLQFIGSPYSLPYAVPPNFLPSPLLSPSANLATSHLPHFVPYASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GIHYPPLHYAQLPSTSLQFIGSPYSLPYAVPPNFLPSPLLSPSANLATSHLPHFVPYASL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LAEGATPPPQAPSPAHSFNKAPSATSPSGQLPHHSSTQPLDLAPGRMPIYYQMSRLPAGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAEGATPPPQAPSPAHSFNKAPSATSPSGQLPHHSSTQPLDLAPGRMPIYYQMSRLPAGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 TLHETPPAGASPVLTPQESQSALEAAAANGGQRPRERNLVRRESEALDSPNSKGEGQGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TLHETPPAGASPVLTPQESQSALEAAAANGGQRPRERNLVRRESEALDSPNSKGEGQGLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PVVECVVDGQLFSGSQTPRVEVAAPAHRGTPDTDLEVQRVVGALASQDYRVVAAQRKEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVVECVVDGQLFSGSQTPRVEVAAPAHRGTPDTDLEVQRVVGALASQDYRVVAAQRKEEP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SPLNLSHHTPDHQGEGRGSARNPAELAEKSQARGFYPQSHQEPVKHRPLPKAMVVANGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPLNLSHHTPDHQGEGRGSARNPAELAEKSQARGFYPQSHQEPVKHRPLPKAMVVANGNL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 VPTGTDSGLLPVGSEILVASSLDVQARATFPDKEPTPPPITSSHLPSHFMKGAIIQLATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPTGTDSGLLPVGSEILVASSLDVQARATFPDKEPTPPPITSSHLPSHFMKGAIIQLATG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 ELKRVEDLQTQDFVRSAEVSGGLKIDSSTVVDIQESQWPGFVMLHFVVGEQQSKVSIEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ELKRVEDLQTQDFVRSAEVSGGLKIDSSTVVDIQESQWPGFVMLHFVVGEQQSKVSIEVP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 PEHPFFVYGQGWSSCSPGRTTQLFSLPCHRLQVGDVCISISLQSLNSNSVSQASCAPPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PEHPFFVYGQGWSSCSPGRTTQLFSLPCHRLQVGDVCISISLQSLNSNSVSQASCAPPSQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 LGPPRERPERTVLGSRELCDSEGKSQPAGEGSRVVEPSQPESGAQACWPAPSFQRYSMQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGPPRERPERTVLGSRELCDSEGKSQPAGEGSRVVEPSQPESGAQACWPAPSFQRYSMQG
610 620 630 640 650 660
670 680
pF1KE5 EEARAALLRPSFIPQEVKLSIEGRSNAGK
:::::::::::::::::::::::::::::
CCDS45 EEARAALLRPSFIPQEVKLSIEGRSNAGK
670 680
>>CCDS34342.1 ATXN1 gene_id:6310|Hs108|chr6 (815 aa)
initn: 916 init1: 565 opt: 579 Z-score: 367.2 bits: 78.6 E(32554): 3.9e-14
Smith-Waterman score: 794; 30.8% identity (53.7% similar) in 760 aa overlap (82-689:77-815)
60 70 80 90 100 110
pF1KE5 AGQSQAGARVSLGGDGAEAITGLTVDQYGMLYKVAVPPATFSPTGLPSVVNMSPLPPTFN
:.:. .:: . : : :. :.
CCDS34 PGNPGGRGHGGGRHGPAGTSVELGLQQGIGLHKALSTGLDYSPPSAPRSV---PVATTLP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE5 VASSLIQHPGIHYPPLHYAQLPSTSLQFIGSP-YSLPYAVPPNFLPSPLLSPSANLATSH
.: . : :: :..::.:: : .::::: :: :: .:.:: :. :.:: .::
CCDS34 AAYATPQ-PGTPVSPVQYAHLPHT-FQFIGSSQYSGTYA---SFIPSQLIPPTANPVTSA
110 120 130 140 150
180 190
pF1KE5 L--------P----HFVPYASLLAE-GA---TPPPQAPSPAHS-----------------
. : .. :..:::. :. :: .: . ..
CCDS34 VASAAGATTPSQRSQLEAYSTLLANMGSLSQTPGHKAEQQQQQQQQQQQQHQHQQQQQQQ
160 170 180 190 200 210
200 210 220 230
pF1KE5 --------FNKAPSATSPSGQLPH------HSSTQPLDL----APGRMPIYYQMSRLPAG
...::. .:.. : : :..: . .: .:.. . .
CCDS34 QQQQQQQHLSRAPGLITPGSPPPAQQNQYVHISSSPQNTGRTASPPAIPVHLHPHQTMIP
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE5 YTLHETPP-------AGASPVLTPQESQSALEAAAANGGQRPRER-NLVRRESEALDSPN
.:: :: : .. ..:.:. . :.. . . . .: : ..:. .:.
CCDS34 HTLTLGPPSQVVMQYADSGSHFVPREATKKAESSRLQQAIQAKEVLNGEMEKSRRYGAPS
280 290 300 310 320 330
300 310 320 330
pF1KE5 SKGEGQGL-----VP----VVECVVDGQLFS-GSQTP---RVEVAAPAHRGTPDTDLEVQ
: : : :: . :: . . .:. : :. : . . .:: .:::::
CCDS34 SADLGLGKAGGKSVPHPYESRHVVVHPSPSDYSSRDPSGVRASVMVLPNSNTPAADLEVQ
340 350 360 370 380 390
340 350 360 370 380
pF1KE5 RVVGALASQDYRVVAAQRKEEPSPLN----LSHHTPDHQG---------EGRGSARNPAE
. :..:. :: :: : : :.. . :: .:
CCDS34 Q-------------ATHREASPSTLNDKSGLHLGKPGHRSYALSPHTVIQTTHSASEPLP
400 410 420 430 440
390 400 410 420 430
pF1KE5 LAEKSQA--RGFYP------QSHQEPVKHR-PLPKAMVVANGN--LVPTG-TD---SGLL
.. . : : : ...:. . . ::. .:. . . :.:.: :: ::
CCDS34 VGLPATAFYAGTQPPVIGYLSGQQQAITYAGSLPQHLVIPGTQPLLIPVGSTDMEASGAA
450 460 470 480 490 500
440 450 460
pF1KE5 P--VGS--------EILVASSLD-------------------VQARATFPDKEPTPPPIT
: : : . .:...: :::. .: . . : .
CCDS34 PAIVTSSPQFAAVPHTFVTTALPKSENFNPEALVTQAAYPAMVQAQIHLPVVQSVASPAA
510 520 530 540 550 560
470 480 490 500 510 520
pF1KE5 SSH-LPSHFMKGAIIQLATGELKRVEDLQTQDFVRSAEVSGGLKIDSSTVVDIQESQWPG
. :: .::::.:::::.::::.::::.:.::..:::.:. :::::::: :..:. ::
CCDS34 APPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPG
570 580 590 600 610 620
530 540 550 560 570 580
pF1KE5 FVMLHFVVGEQQSKVSIEVPPEHPFFVYGQGWSSCSPGRTTQLFSLPCHRLQVGDVCISI
....:.:::....::.:: :.::::.::::::: : ::.:::.::: .:.:::::::.
CCDS34 VAVIQFAVGEHRAQVSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL
630 640 650 660 670 680
590 600 610 620
pF1KE5 SLQSLNSNSVSQASCAPPSQ----------LGPPRER---PERTV-LGSRELCDSEGKSQ
.:..:...::.... . :.. :. :.: : . :: .. . .:. .
CCDS34 TLKNLKNGSVKKGQPVDPASVLLKHSKADGLAGSRHRYAEQENGINQGSAQMLSENGELK
690 700 710 720 730 740
630 640 650 660 670
pF1KE5 -------PAGEGSRVVEPSQPESGAQACWPAPSFQRYSMQGEEARAALLRPSFIPQEVKL
::. .:::.: . . : :: .. . .: .: .::.::::::.
CCDS34 FPEKMGLPAAPFLTKIEPSKPAATRKRRWSAPESRKLEKSEDEPPLTLPKPSLIPQEVKI
750 760 770 780 790 800
680
pF1KE5 SIEGRSNAGK
::::::.::
CCDS34 CIEGRSNVGK
810
689 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:42:21 2016 done: Tue Nov 8 06:42:22 2016
Total Scan time: 3.840 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]