FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2264, 334 aa 1>>>pF1KE2264 334 - 334 aa - 334 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2320+/-0.000379; mu= 16.2729+/- 0.023 mean_var=68.8821+/-13.753, 0's: 0 Z-trim(112.5): 21 B-trim: 38 in 1/51 Lambda= 0.154533 statistics sampled from 21386 (21396) to 21386 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.251), width: 16 Scan time: 6.900 The best scores are: opt bits E(85289) NP_057393 (OMIM: 610286) leucine carboxyl methyltr ( 334) 2257 512.4 5.5e-145 XP_011544166 (OMIM: 610286) PREDICTED: leucine car ( 357) 2003 455.8 6.4e-128 XP_005255411 (OMIM: 610286) PREDICTED: leucine car ( 234) 1561 357.1 2.1e-98 NP_001027563 (OMIM: 610286) leucine carboxyl methy ( 279) 959 222.9 6.1e-58 XP_011544164 (OMIM: 610286) PREDICTED: leucine car ( 302) 959 223.0 6.5e-58 NP_055608 (OMIM: 611246) tRNA wybutosine-synthesiz ( 686) 618 147.2 9.8e-35 >>NP_057393 (OMIM: 610286) leucine carboxyl methyltransf (334 aa) initn: 2257 init1: 2257 opt: 2257 Z-score: 2724.0 bits: 512.4 E(85289): 5.5e-145 Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 250 260 270 280 290 300 310 320 330 pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::::::::: NP_057 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 310 320 330 >>XP_011544166 (OMIM: 610286) PREDICTED: leucine carboxy (357 aa) initn: 2023 init1: 2003 opt: 2003 Z-score: 2417.5 bits: 455.8 E(85289): 6.4e-128 Smith-Waterman score: 2003; 99.7% identity (100.0% similar) in 298 aa overlap (37-334:60-357) 10 20 30 40 50 60 pF1KE2 ESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEI .::::::::::::::::::::::::::::: XP_011 ILATLIGWTVRSFFLGRMETCCSHLGLRSGRRFAVSIGYWHDPYIQHFVRLSKERKAPEI 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE2 NRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMI 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE2 VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCN 150 160 170 180 190 200 190 200 210 220 230 240 pF1KE2 MNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLR 210 220 230 240 250 260 250 260 270 280 290 300 pF1KE2 RRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEME 270 280 290 300 310 320 310 320 330 pF1KE2 LLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::: XP_011 LLEQLMRHYCLCWATKGGNELGLKEITY 330 340 350 >>XP_005255411 (OMIM: 610286) PREDICTED: leucine carboxy (234 aa) initn: 1561 init1: 1561 opt: 1561 Z-score: 1887.6 bits: 357.1 E(85289): 2.1e-98 Smith-Waterman score: 1561; 100.0% identity (100.0% similar) in 234 aa overlap (101-334:1-234) 80 90 100 110 120 130 pF1KE2 FARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRK :::::::::::::::::::::::::::::: XP_005 MDTTFWRLKDEDLLPSKYFEVDFPMIVTRK 10 20 30 140 150 160 170 180 190 pF1KE2 LHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQ 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE2 LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQC 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE2 DLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQ 160 170 180 190 200 210 320 330 pF1KE2 LMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::: XP_005 LMRHYCLCWATKGGNELGLKEITY 220 230 >>NP_001027563 (OMIM: 610286) leucine carboxyl methyltra (279 aa) initn: 959 init1: 959 opt: 959 Z-score: 1161.2 bits: 222.9 E(85289): 6.1e-58 Smith-Waterman score: 1771; 83.5% identity (83.5% similar) in 334 aa overlap (1-334:1-279) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE ::::::::::::::: NP_001 VDFPMIVTRKLHSIK--------------------------------------------- 130 190 200 210 220 230 240 pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ----------LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 140 150 160 170 180 250 260 270 280 290 300 pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 190 200 210 220 230 240 310 320 330 pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::::::::: NP_001 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 250 260 270 >>XP_011544164 (OMIM: 610286) PREDICTED: leucine carboxy (302 aa) initn: 979 init1: 959 opt: 959 Z-score: 1160.7 bits: 223.0 E(85289): 6.5e-58 Smith-Waterman score: 1517; 81.2% identity (81.5% similar) in 298 aa overlap (37-334:60-302) 10 20 30 40 50 60 pF1KE2 ESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEI .::::::::::::::::::::::::::::: XP_011 ILATLIGWTVRSFFLGRMETCCSHLGLRSGRRFAVSIGYWHDPYIQHFVRLSKERKAPEI 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE2 NRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMI 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE2 VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCN ::::::::: XP_011 VTRKLHSIK--------------------------------------------------- 150 190 200 210 220 230 240 pF1KE2 MNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ----LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLR 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 RRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEME 220 230 240 250 260 270 310 320 330 pF1KE2 LLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::: XP_011 LLEQLMRHYCLCWATKGGNELGLKEITY 280 290 300 >>NP_055608 (OMIM: 611246) tRNA wybutosine-synthesizing (686 aa) initn: 529 init1: 339 opt: 618 Z-score: 744.6 bits: 147.2 E(85289): 9.8e-35 Smith-Waterman score: 618; 36.4% identity (65.9% similar) in 305 aa overlap (26-323:13-314) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :..: ....: :: .. :: .::. .: . NP_055 MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAA 10 20 30 40 70 80 90 100 110 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRK-----TECHCQIVNLGAGMDTTFWRLKDEDLLP :.:: :.:::..:...: . ..:::.. . . ::..::::.:. ..::: : NP_055 RRAPLIHRGYYVRARAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 -SKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRD . .::::: .. :: . : : : . : : .. ..: : ..: :::. NP_055 RAAVWEVDFPDVARRKAERIGETPELCA--LTGPFERGEPASALCFESADYCILGLDLRQ 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE2 LSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMG :...:: : .... ::::.:: ::.:. ::..: :. :::. : :.:. :::. NP_055 LQRVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQ 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE2 DRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEV : :::.:....:. . : :.: ..:.:..:.:. :: . .:::: :.:. :: : NP_055 DAFGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEER 230 240 250 260 270 280 300 310 320 330 pF1KE2 SRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :.:..: .::.: . :: . :..: NP_055 RRVENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPAS 290 300 310 320 330 340 334 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:06:01 2016 done: Sun Nov 6 05:06:03 2016 Total Scan time: 6.900 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]