FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2264, 334 aa 1>>>pF1KE2264 334 - 334 aa - 334 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9227+/-0.000876; mu= 18.0279+/- 0.053 mean_var=64.9906+/-12.640, 0's: 0 Z-trim(105.9): 14 B-trim: 6 in 1/48 Lambda= 0.159092 statistics sampled from 8654 (8658) to 8654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.266), width: 16 Scan time: 2.530 The best scores are: opt bits E(32554) CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 ( 334) 2257 526.8 9.3e-150 CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 ( 279) 959 228.9 3.9e-60 CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 ( 686) 618 150.9 2.8e-36 >>CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 (334 aa) initn: 2257 init1: 2257 opt: 2257 Z-score: 2802.1 bits: 526.8 E(32554): 9.3e-150 Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 250 260 270 280 290 300 310 320 330 pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::::::::: CCDS45 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 310 320 330 >>CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 (279 aa) initn: 959 init1: 959 opt: 959 Z-score: 1193.2 bits: 228.9 E(32554): 3.9e-60 Smith-Waterman score: 1771; 83.5% identity (83.5% similar) in 334 aa overlap (1-334:1-279) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE ::::::::::::::: CCDS45 VDFPMIVTRKLHSIK--------------------------------------------- 130 190 200 210 220 230 240 pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ----------LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 140 150 160 170 180 250 260 270 280 290 300 pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 190 200 210 220 230 240 310 320 330 pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :::::::::::::::::::::::::::::::::: CCDS45 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 250 260 270 >>CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 (686 aa) initn: 529 init1: 339 opt: 618 Z-score: 764.7 bits: 150.9 E(32554): 2.8e-36 Smith-Waterman score: 618; 36.4% identity (65.9% similar) in 305 aa overlap (26-323:13-314) 10 20 30 40 50 60 pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE :..: ....: :: .. :: .::. .: . CCDS10 MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAA 10 20 30 40 70 80 90 100 110 pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRK-----TECHCQIVNLGAGMDTTFWRLKDEDLLP :.:: :.:::..:...: . ..:::.. . . ::..::::.:. ..::: : CCDS10 RRAPLIHRGYYVRARAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 -SKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRD . .::::: .. :: . : : : . : : .. ..: : ..: :::. CCDS10 RAAVWEVDFPDVARRKAERIGETPELCA--LTGPFERGEPASALCFESADYCILGLDLRQ 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE2 LSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMG :...:: : .... ::::.:: ::.:. ::..: :. :::. : :.:. :::. CCDS10 LQRVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQ 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE2 DRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEV : :::.:....:. . : :.: ..:.:..:.:. :: . .:::: :.:. :: : CCDS10 DAFGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEER 230 240 250 260 270 280 300 310 320 330 pF1KE2 SRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY :.:..: .::.: . :: . :..: CCDS10 RRVENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPAS 290 300 310 320 330 340 334 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:06:01 2016 done: Sun Nov 6 05:06:01 2016 Total Scan time: 2.530 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]