FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6781, 567 aa 1>>>pF1KE6781 567 - 567 aa - 567 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4990+/-0.000916; mu= 12.6314+/- 0.055 mean_var=96.6152+/-19.529, 0's: 0 Z-trim(108.2): 93 B-trim: 0 in 0/52 Lambda= 0.130482 statistics sampled from 9974 (10069) to 9974 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.309), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS45088.1 RABGGTA gene_id:5875|Hs108|chr14 ( 567) 3831 731.9 5.1e-211 >>CCDS45088.1 RABGGTA gene_id:5875|Hs108|chr14 (567 aa) initn: 3831 init1: 3831 opt: 3831 Z-score: 3901.9 bits: 731.9 E(32554): 5.1e-211 Smith-Waterman score: 3831; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567) 10 20 30 40 50 60 pF1KE6 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 WHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 WHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRPSHVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRPSHVW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCELSVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCELSVEK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRAT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 YLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRTLPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 YLDDLRSKFLLENSVLKMEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRTLPP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 ALAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ALAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNL 490 500 510 520 530 540 550 560 pF1KE6 QGNPLCQAVGILEQLAELLPSVSSVLT ::::::::::::::::::::::::::: CCDS45 QGNPLCQAVGILEQLAELLPSVSSVLT 550 560 567 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:17:58 2016 done: Tue Nov 8 16:17:58 2016 Total Scan time: 2.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]