FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6358, 326 aa 1>>>pF1KE6358 326 - 326 aa - 326 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6137+/-0.000346; mu= 14.5562+/- 0.021 mean_var=70.5114+/-14.209, 0's: 0 Z-trim(114.9): 21 B-trim: 44 in 1/48 Lambda= 0.152737 statistics sampled from 24945 (24964) to 24945 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.293), width: 16 Scan time: 5.340 The best scores are: opt bits E(85289) NP_001629 (OMIM: 107760) apolipoprotein F precurso ( 326) 2141 480.7 1.8e-135 >>NP_001629 (OMIM: 107760) apolipoprotein F precursor [H (326 aa) initn: 2141 init1: 2141 opt: 2141 Z-score: 2553.2 bits: 480.7 E(85289): 1.8e-135 Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326) 10 20 30 40 50 60 pF1KE6 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 250 260 270 280 290 300 310 320 pF1KE6 VSSAPYWGWAIIKSYDLDPGAGSLEI :::::::::::::::::::::::::: NP_001 VSSAPYWGWAIIKSYDLDPGAGSLEI 310 320 326 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:26:09 2016 done: Tue Nov 8 12:26:10 2016 Total Scan time: 5.340 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]