FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4015, 193 aa 1>>>pF1KE4015 193 - 193 aa - 193 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5162+/-0.00107; mu= 2.7837+/- 0.062 mean_var=218.2127+/-46.976, 0's: 0 Z-trim(110.1): 846 B-trim: 142 in 1/49 Lambda= 0.086823 statistics sampled from 10378 (11357) to 10378 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.349), width: 16 Scan time: 2.090 The best scores are: opt bits E(32554) CCDS44896.1 ZNF740 gene_id:283337|Hs108|chr12 ( 193) 1329 178.7 1.9e-45 CCDS3031.1 ZNF148 gene_id:7707|Hs108|chr3 ( 794) 460 70.6 2.9e-12 >>CCDS44896.1 ZNF740 gene_id:283337|Hs108|chr12 (193 aa) initn: 1329 init1: 1329 opt: 1329 Z-score: 929.2 bits: 178.7 E(32554): 1.9e-45 Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE4 MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 KSRSRKDDDSLSEASHSKKTVKKVVVVEQNGSFQVKIPKNFVCEHCFGAFRSSYHLKRHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 KSRSRKDDDSLSEASHSKKTVKKVVVVEQNGSFQVKIPKNFVCEHCFGAFRSSYHLKRHI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LIHTGEKPFECDICDMRFIQKYHLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LIHTGEKPFECDICDMRFIQKYHLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQ 130 140 150 160 170 180 190 pF1KE4 GCQSKTSDGQFSL ::::::::::::: CCDS44 GCQSKTSDGQFSL 190 >>CCDS3031.1 ZNF148 gene_id:7707|Hs108|chr3 (794 aa) initn: 958 init1: 420 opt: 460 Z-score: 333.8 bits: 70.6 E(32554): 2.9e-12 Smith-Waterman score: 496; 46.8% identity (70.1% similar) in 154 aa overlap (60-185:130-283) 30 40 50 60 70 80 pF1KE4 QIASKQAENGERAGSPDVLRCSSQGHRKDSDKSRSRKDDDSLSEASHSKKTVKKVVVVEQ ::.. :. : .. ...... :...... CCDS30 LPQGLQYALNVPISVKQEITFTDVSEQLMRDKKQIREPVDLQKKKKRKQRSPAKILTINE 100 110 120 130 140 150 90 100 110 120 130 140 pF1KE4 NGSFQVKIPKNFVCEHCFGAFRSSYHLKRHILIHTGEKPFECDICDMRFIQKY------- .::. .: ::. ::::: .:::..:::.::..::::::::.:. ::::::::: CCDS30 DGSLGLKTPKSHVCEHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQKYLLQRHEK 160 170 180 190 200 210 150 160 170 180 pF1KE4 ---------------------HLERHKRVHSGEKPYQCERCHQCFSRTDRLLRHKRMCQG :.:::::.:::::::::: : : ::::::.:.:::::. CCDS30 IHTGEKPFRCDECGMRFIQKYHMERHKRTHSGEKPYQCEYCLQYFSRTDRVLKHKRMCHE 220 230 240 250 260 270 190 pF1KE4 CQSKTSDGQFSL ..: CCDS30 NHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTEKKSSGMDKESALDKSDLK 280 290 300 310 320 330 193 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:22:25 2016 done: Sun Nov 6 04:22:26 2016 Total Scan time: 2.090 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]