FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6517, 212 aa 1>>>pF1KE6517 212 - 212 aa - 212 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5742+/-0.000393; mu= 11.6560+/- 0.024 mean_var=59.3376+/-11.607, 0's: 0 Z-trim(111.0): 15 B-trim: 0 in 0/52 Lambda= 0.166498 statistics sampled from 19460 (19472) to 19460 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.228), width: 16 Scan time: 5.530 The best scores are: opt bits E(85289) NP_057139 (OMIM: 611853) 39S ribosomal protein L48 ( 212) 1327 327.2 1.2e-89 NP_001305427 (OMIM: 611853) 39S ribosomal protein ( 194) 1113 275.8 3.3e-74 XP_016873408 (OMIM: 611853) PREDICTED: 39S ribosom ( 202) 1101 272.9 2.6e-73 NP_001305428 (OMIM: 611853) 39S ribosomal protein ( 253) 1101 272.9 3.2e-73 NP_001305429 (OMIM: 611853) 39S ribosomal protein ( 121) 423 110.0 1.7e-24 XP_016866485 (OMIM: 611976) PREDICTED: 28S ribosom ( 160) 128 39.2 0.0047 XP_005249263 (OMIM: 611976) PREDICTED: 28S ribosom ( 200) 128 39.2 0.0058 NP_060611 (OMIM: 611976) 28S ribosomal protein S10 ( 201) 128 39.2 0.0058 XP_011513027 (OMIM: 611976) PREDICTED: 28S ribosom ( 210) 128 39.2 0.006 XP_011513026 (OMIM: 611976) PREDICTED: 28S ribosom ( 211) 128 39.2 0.0061 >>NP_057139 (OMIM: 611853) 39S ribosomal protein L48, mi (212 aa) initn: 1327 init1: 1327 opt: 1327 Z-score: 1730.3 bits: 327.2 E(85289): 1.2e-89 Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE 130 140 150 160 170 180 190 200 210 pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK :::::::::::::::::::::::::::::::: NP_057 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK 190 200 210 >>NP_001305427 (OMIM: 611853) 39S ribosomal protein L48, (194 aa) initn: 1110 init1: 1110 opt: 1113 Z-score: 1453.1 bits: 275.8 E(85289): 3.3e-74 Smith-Waterman score: 1113; 93.8% identity (94.8% similar) in 192 aa overlap (21-212:3-194) 10 20 30 40 50 60 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK .: : .:: : ::::::::::::::::::::::: NP_001 MGLSSCRKTSSGLPLILHYGGILLSISRPYKTKPTHGIGKYK 10 20 30 40 70 80 90 100 110 120 pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE 110 120 130 140 150 160 190 200 210 pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK :::::::::::::::::::::::::::::::: NP_001 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK 170 180 190 >>XP_016873408 (OMIM: 611853) PREDICTED: 39S ribosomal p (202 aa) initn: 1101 init1: 1101 opt: 1101 Z-score: 1437.3 bits: 272.9 E(85289): 2.6e-73 Smith-Waterman score: 1101; 100.0% identity (100.0% similar) in 175 aa overlap (38-212:28-202) 10 20 30 40 50 60 pF1KE6 VLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYKHLIKAEE :::::::::::::::::::::::::::::: XP_016 MIIAPCSLELLGSSNPPASASGVAGITGGILLSISRPYKTKPTHGIGKYKHLIKAEE 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 PKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAM 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 PTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVK 120 130 140 150 160 170 190 200 210 pF1KE6 EHTEEDFKGRFKARPELEELLAKLK ::::::::::::::::::::::::: XP_016 EHTEEDFKGRFKARPELEELLAKLK 180 190 200 >>NP_001305428 (OMIM: 611853) 39S ribosomal protein L48, (253 aa) initn: 1313 init1: 1101 opt: 1101 Z-score: 1435.6 bits: 272.9 E(85289): 3.2e-73 Smith-Waterman score: 1192; 83.2% identity (83.2% similar) in 244 aa overlap (10-212:10-253) 10 20 30 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSV----------------------- :::::::::::::::::::::::::::: NP_001 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVERRSCLWPRLEYSGMIIAPCSLE 10 20 30 40 50 60 40 50 60 70 pF1KE6 ------------------GGILLSISRPYKTKPTHGIGKYKHLIKAEEPKKKKGKVEVRA :::::::::::::::::::::::::::::::::::::::::: NP_001 LLGSSNPPASASGVAGITGGILLSISRPYKTKPTHGIGKYKHLIKAEEPKKKKGKVEVRA 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE6 INLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 INLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQD 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE6 QGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRFK 190 200 210 220 230 240 200 210 pF1KE6 ARPELEELLAKLK ::::::::::::: NP_001 ARPELEELLAKLK 250 >>NP_001305429 (OMIM: 611853) 39S ribosomal protein L48, (121 aa) initn: 423 init1: 423 opt: 423 Z-score: 560.8 bits: 110.0 E(85289): 1.7e-24 Smith-Waterman score: 562; 56.6% identity (56.6% similar) in 212 aa overlap (1-212:1-121) 10 20 30 40 50 60 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK ::::::: NP_001 HLIKAEE----------------------------------------------------- 130 140 150 160 170 180 pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE :::::::::::::::::::::: NP_001 --------------------------------------ISGLSATFAEIFLEIIQSSLPE 70 80 190 200 210 pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK :::::::::::::::::::::::::::::::: NP_001 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK 90 100 110 120 >>XP_016866485 (OMIM: 611976) PREDICTED: 28S ribosomal p (160 aa) initn: 82 init1: 61 opt: 128 Z-score: 175.8 bits: 39.2 E(85289): 0.0047 Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:29-151) 60 70 80 90 100 110 pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC : : :.. . ..: .. .:: .: : XP_016 MKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA 10 20 30 40 50 120 130 140 150 160 pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE . .::::.: : . :: .:: .: .. . : : ... :... :. XP_016 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD 60 70 80 90 100 110 170 180 190 200 210 pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK ..:: :: .::::: . : . :.. ..: .: : : XP_016 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS 120 130 140 150 160 >>XP_005249263 (OMIM: 611976) PREDICTED: 28S ribosomal p (200 aa) initn: 98 init1: 61 opt: 128 Z-score: 174.2 bits: 39.2 E(85289): 0.0058 Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:69-191) 60 70 80 90 100 110 pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC : : :.. . ..: .. .:: .: : XP_005 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA 40 50 60 70 80 90 120 130 140 150 160 pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE . .::::.: : . :: .:: .: .. . : : ... :... :. XP_005 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD 100 110 120 130 140 150 170 180 190 200 210 pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK ..:: :: .::::: . : . :.. ..: .: : : XP_005 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS 160 170 180 190 200 >>NP_060611 (OMIM: 611976) 28S ribosomal protein S10, mi (201 aa) initn: 101 init1: 61 opt: 128 Z-score: 174.2 bits: 39.2 E(85289): 0.0058 Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:70-192) 60 70 80 90 100 110 pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC : : :.. . ..: .. .:: .: : NP_060 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA 40 50 60 70 80 90 120 130 140 150 160 pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE . .::::.: : . :: .:: .: .. . : : ... :... :. NP_060 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD 100 110 120 130 140 150 170 180 190 200 210 pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK ..:: :: .::::: . : . :.. ..: .: : : NP_060 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS 160 170 180 190 200 >>XP_011513027 (OMIM: 611976) PREDICTED: 28S ribosomal p (210 aa) initn: 98 init1: 61 opt: 128 Z-score: 173.9 bits: 39.2 E(85289): 0.006 Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:79-201) 60 70 80 90 100 110 pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC : : :.. . ..: .. .:: .: : XP_011 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA 50 60 70 80 90 100 120 130 140 150 160 pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE . .::::.: : . :: .:: .: .. . : : ... :... :. XP_011 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD 110 120 130 140 150 160 170 180 190 200 210 pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK ..:: :: .::::: . : . :.. ..: .: : : XP_011 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS 170 180 190 200 210 >>XP_011513026 (OMIM: 611976) PREDICTED: 28S ribosomal p (211 aa) initn: 101 init1: 61 opt: 128 Z-score: 173.8 bits: 39.2 E(85289): 0.0061 Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:80-202) 60 70 80 90 100 110 pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC : : :.. . ..: .. .:: .: : XP_011 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA 50 60 70 80 90 100 120 130 140 150 160 pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE . .::::.: : . :: .:: .: .. . : : ... :... :. XP_011 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD 110 120 130 140 150 160 170 180 190 200 210 pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK ..:: :: .::::: . : . :.. ..: .: : : XP_011 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS 170 180 190 200 210 212 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:01:38 2016 done: Tue Nov 8 14:01:39 2016 Total Scan time: 5.530 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]