FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6517, 212 aa 1>>>pF1KE6517 212 - 212 aa - 212 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2720+/-0.000888; mu= 13.2449+/- 0.053 mean_var=54.5986+/-10.814, 0's: 0 Z-trim(104.2): 21 B-trim: 301 in 1/50 Lambda= 0.173574 statistics sampled from 7794 (7798) to 7794 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.24), width: 16 Scan time: 1.920 The best scores are: opt bits E(32554) CCDS44676.1 MRPL48 gene_id:51642|Hs108|chr11 ( 212) 1327 340.3 5.5e-94 CCDS81594.1 MRPL48 gene_id:51642|Hs108|chr11 ( 121) 423 113.8 4.6e-26 >>CCDS44676.1 MRPL48 gene_id:51642|Hs108|chr11 (212 aa) initn: 1327 init1: 1327 opt: 1327 Z-score: 1800.9 bits: 340.3 E(32554): 5.5e-94 Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE 130 140 150 160 170 180 190 200 210 pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK :::::::::::::::::::::::::::::::: CCDS44 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK 190 200 210 >>CCDS81594.1 MRPL48 gene_id:51642|Hs108|chr11 (121 aa) initn: 423 init1: 423 opt: 423 Z-score: 581.5 bits: 113.8 E(32554): 4.6e-26 Smith-Waterman score: 562; 56.6% identity (56.6% similar) in 212 aa overlap (1-212:1-121) 10 20 30 40 50 60 pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK ::::::: CCDS81 HLIKAEE----------------------------------------------------- 130 140 150 160 170 180 pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE :::::::::::::::::::::: CCDS81 --------------------------------------ISGLSATFAEIFLEIIQSSLPE 70 80 190 200 210 pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK :::::::::::::::::::::::::::::::: CCDS81 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK 90 100 110 120 212 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:01:38 2016 done: Tue Nov 8 14:01:38 2016 Total Scan time: 1.920 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]