(Circular) (Six-base) MAPSORT of: pFN21AE1116.seq Check: 3042 from: 1 to: 5305 pFN21AE1116 5305 bp With 182 enzymes: SgfI * August 16, 2010 14:54 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3115 278 Size: 53 83 186 936 1579 2468 Fragments arranged by size: 2468 1579 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2648 1937 Size: 711 4594 Acc65I G'GTAC_C Cuts at: 2626 2626 Size: 5305 AclI AA'CG_TT Cuts at: 1563 3432 3805 1563 Size: 1869 373 3063 Fragments arranged by size: 3063 1869 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3368 4752 5020 1632 Size: 1736 1384 268 1917 Fragments arranged by size: 1917 1736 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5108 AflIII A'CryG_T Cuts at: 1203 4204 5181 1203 Size: 3001 977 1327 Fragments arranged by size: 3001 1327 977 AgeI A'CCGG_T Cuts at: 4136 4136 Size: 5305 AhdI GACnn_n'nnGTC Cuts at: 4034 4034 Size: 5305 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5305 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5305 AlwNI CAG_nnn'CTG Cuts at: 3048 4620 3048 Size: 1572 3733 ApaLI G'TGCA_C Cuts at: 3362 4518 3362 Size: 1156 4149 ApoI r'AATT_y Cuts at: 1493 2614 2840 2992 5101 1493 Size: 1121 226 152 2109 1697 Fragments arranged by size: 2109 1697 1121 226 152 AseI AT'TA_AT Cuts at: 160 1032 3859 160 Size: 872 2827 1606 Fragments arranged by size: 2827 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5305 AvaI C'yCGr_G Cuts at: 1870 1943 2085 2206 2630 1870 Size: 73 142 121 424 4545 Fragments arranged by size: 4545 424 142 121 73 BamHI G'GATC_C Cuts at: 2635 3002 2635 Size: 367 4938 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2626 4081 618 Size: 325 217 627 839 1455 1842 Fragments arranged by size: 1842 1455 839 627 325 217 BanII G_rGCy'C Cuts at: 1391 2219 2571 2624 1391 Size: 828 352 53 4072 Fragments arranged by size: 4072 828 352 53 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2031 2355 928 Size: 971 132 324 3878 Fragments arranged by size: 3878 971 324 132 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2380 2414 3496 3530 1903 Size: 34 443 34 1082 34 3678 Fragments arranged by size: 3678 1082 443 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3197 4407 3197 Size: 1210 4095 BclI T'GATC_A Cuts at: 1548 1548 Size: 5305 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2417 3916 136 Size: 107 122 71 631 605 745 1499 1525 Fragments arranged by size: 1525 1499 745 631 605 122 107 71 BglII A'GATC_T Cuts at: 5300 5300 Size: 5305 BlpI GC'TnA_GC Cuts at: 2722 2722 Size: 5305 Bme1580I G_kGCm'C Cuts at: 1790 3366 4522 1790 Size: 1576 1156 2573 Fragments arranged by size: 2573 1576 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5305 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2425 3036 3994 Size: 416 53 83 399 24 1008 611 958 Cuts at: 3994 442 Size: 1753 Fragments arranged by size: 1753 1008 958 611 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5305 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2306 3965 1239 Size: 1067 1659 2579 Fragments arranged by size: 2579 1659 1067 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2018 2555 3430 4295 4593 2018 Size: 537 875 865 298 2730 Fragments arranged by size: 2730 875 865 537 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3968 882 Size: 617 2469 2219 Fragments arranged by size: 2469 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2599 3096 493 Size: 711 1395 497 2702 Fragments arranged by size: 2702 1395 711 497 BsaBI GATnn'nnATC Cuts at: 5299 5299 Size: 5305 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3112 3494 4129 275 Size: 53 83 186 936 1579 382 635 1451 Fragments arranged by size: 1579 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2499 3738 4136 4410 4557 4968 2499 Size: 1239 398 274 147 411 2836 Fragments arranged by size: 2836 1239 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2273 2303 1178 Size: 30 165 30 870 30 4180 Fragments arranged by size: 4180 870 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2078 2180 1186 Size: 892 102 4311 Fragments arranged by size: 4311 892 102 BseYI C'CCAG_C Cuts at: 4508 5004 4508 Size: 496 4809 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4732 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2047 2755 3516 4544 1540 Size: 275 186 46 708 761 1028 2301 Fragments arranged by size: 2301 1028 761 708 275 186 46 BsiHKAI G_wGCw'C Cuts at: 2271 3366 3451 4522 2271 Size: 1095 85 1071 3054 Fragments arranged by size: 3054 1095 1071 85 BsmI GAATG_Cn' Cuts at: 2816 2909 2816 Size: 93 5212 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2219 2271 2571 2624 3366 3451 4522 Size: 399 429 52 300 53 742 85 1071 Cuts at: 4522 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 429 399 300 85 53 52 BspEI T'CCGG_A Cuts at: 2499 4968 2499 Size: 2469 2836 BspHI T'CATG_A Cuts at: 3194 4924 3194 Size: 1730 3575 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2660 844 Size: 1816 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3192 1394 Size: 429 1369 3507 Fragments arranged by size: 3507 1369 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3800 3974 65 Size: 1183 2552 174 1396 Fragments arranged by size: 2552 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3949 4136 1700 Size: 110 2139 187 2869 Fragments arranged by size: 2869 2139 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5305 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5305 BssSI C'ACGA_G Cuts at: 3365 4377 3365 Size: 1012 4293 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5305 BstBI TT'CG_AA Cuts at: 2021 4109 2021 Size: 2088 3217 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5305 BstYI r'GATC_y Cuts at: 1972 2635 3002 3387 3404 4856 4942 4954 5300 Size: 663 367 385 17 1452 86 12 346 Cuts at: 5300 1972 Size: 1977 Fragments arranged by size: 1977 1452 663 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2191 2296 2307 513 Size: 552 939 187 105 11 3511 Fragments arranged by size: 3511 939 552 187 105 11 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4566 Fragments arranged by size: 4566 683 56 BtsI GCAGTG_nn' Cuts at: 2334 2441 2821 3615 3635 2334 Size: 107 380 794 20 4004 Fragments arranged by size: 4004 794 380 107 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5305 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5270 DraI TTT'AAA Cuts at: 2609 2609 Size: 5305 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2110 4312 809 Size: 507 794 2202 1802 Fragments arranged by size: 2202 1802 794 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2752 3641 5270 Size: 54 1425 50 275 18 922 889 1629 Cuts at: 5270 8 Size: 43 Fragments arranged by size: 1629 1425 922 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2752 1537 Size: 275 940 4090 Fragments arranged by size: 4090 940 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3235 1353 Size: 1882 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3892 4266 4412 387 Size: 1064 138 2303 374 146 1280 Fragments arranged by size: 2303 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2306 3368 3965 4752 5020 1239 Size: 393 674 1062 597 787 268 1524 Fragments arranged by size: 1524 1062 787 674 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2540 2540 Size: 5305 EcoO109I rG'GnC_Cy Cuts at: 2089 2089 Size: 5305 EcoRI G'AATT_C Cuts at: 2614 2992 2614 Size: 378 4927 FspI TGC'GCA Cuts at: 3811 3811 Size: 5305 HaeII r_GCGC'y Cuts at: 1678 2581 4452 1678 Size: 903 1871 2531 Fragments arranged by size: 2531 1871 903 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2324 2356 3946 3978 4020 Size: 32 135 32 752 32 1590 32 42 Cuts at: 4020 4052 1373 Size: 32 2626 Fragments arranged by size: 2626 1590 752 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2649 2895 669 Size: 988 281 711 246 3079 Fragments arranged by size: 3079 988 711 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5305 HpaI GTT'AAC Cuts at: 2895 2895 Size: 5305 KpnI G_GTAC'C Cuts at: 2630 2630 Size: 5305 MfeI C'AATT_G Cuts at: 2904 2904 Size: 5305 MluI A'CGCG_T Cuts at: 5181 5181 Size: 5305 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2067 2202 4419 4603 1305 Size: 762 135 2217 184 2007 Fragments arranged by size: 2217 2007 762 184 135 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3483 Fragments arranged by size: 3483 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3263 3622 3781 518 Size: 648 2097 359 159 2042 Fragments arranged by size: 2097 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2125 2137 2193 2298 2721 3398 4546 4791 Size: 519 12 56 105 423 677 1148 245 Cuts at: 4791 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 519 423 245 105 56 12 NcoI C'CATG_G Cuts at: 513 1065 2004 2307 513 Size: 552 939 303 3511 Fragments arranged by size: 3511 939 552 303 NdeI CA'TA_TG Cuts at: 387 387 Size: 5305 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5305 NotI GC'GGCC_GC Cuts at: 2752 2752 Size: 5305 NspI r_CATG'y Cuts at: 1132 1229 2134 2401 2663 4208 1132 Size: 97 905 267 262 1545 2229 Fragments arranged by size: 2229 1545 905 267 262 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5305 PciI A'CATG_T Cuts at: 4204 4204 Size: 5305 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5305 PmeI GTTT'AAAC Cuts at: 2609 2609 Size: 5305 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3374 3406 4887 4919 3374 Size: 32 1481 32 3760 Fragments arranged by size: 3760 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2089 2089 Size: 5305 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5305 PsiI TTA'TAA Cuts at: 2875 2875 Size: 5305 PstI C_TGCA'G Cuts at: 830 2553 2657 830 Size: 1723 104 3478 Fragments arranged by size: 3478 1723 104 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5305 PvuII CAG'CTG Cuts at: 2125 2125 Size: 5305 SacII CC_GC'GG Cuts at: 2194 2299 2194 Size: 105 5200 SalI G'TCGA_C Cuts at: 1936 2647 1936 Size: 711 4594 SbfI CC_TGCA'GG Cuts at: 2657 2657 Size: 5305 ScaI AGT'ACT Cuts at: 3553 5265 3553 Size: 1712 3593 SfcI C'TryA_G Cuts at: 826 1045 2549 2653 3788 4469 4660 826 Size: 219 1504 104 1135 681 191 1471 Fragments arranged by size: 1504 1471 1135 681 219 191 104 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5305 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5305 SmaI CCC'GGG Cuts at: 1872 2208 2632 1872 Size: 336 424 4545 Fragments arranged by size: 4545 424 336 SmlI C'TyrA_G Cuts at: 820 1017 1943 2033 2570 3409 4310 4572 820 Size: 197 926 90 537 839 901 262 1553 Fragments arranged by size: 1553 926 901 839 537 262 197 90 SnaBI TAC'GTA Cuts at: 493 3096 493 Size: 2603 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5305 SphI G_CATG'C Cuts at: 1132 2663 1132 Size: 1531 3774 SspI AAT'ATT Cuts at: 5 52 2386 3229 5 Size: 47 2334 843 2081 Fragments arranged by size: 2334 2081 843 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5305 StyI C'CwwG_G Cuts at: 513 1065 2004 2050 2307 2744 513 Size: 552 939 46 257 437 3074 Fragments arranged by size: 3074 939 552 437 257 46 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3332 3349 3502 3687 4132 325 Size: 1255 1752 17 153 185 445 1498 Fragments arranged by size: 1752 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3551 5263 96 Size: 274 80 33 51 1443 1574 1712 138 Fragments arranged by size: 1712 1574 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5265 5297 5265 Size: 32 5273 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5305 XbaI T'CTAG_A Cuts at: 2641 2641 Size: 5305 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5305 XmaI C'CCGG_G Cuts at: 1870 2206 2630 1870 Size: 336 424 4545 Fragments arranged by size: 4545 424 336 XmnI GAAnn'nnTTC Cuts at: 3434 3434 Size: 5305 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3113 276 Size: 53 83 186 936 1579 2468 Fragments arranged by size: 2468 1579 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacI SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI