FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3425, 542 aa 1>>>pF1KE3425 542 - 542 aa - 542 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3894+/-0.000892; mu= -1.3602+/- 0.054 mean_var=359.0761+/-73.633, 0's: 0 Z-trim(116.9): 44 B-trim: 0 in 0/54 Lambda= 0.067683 statistics sampled from 17515 (17554) to 17515 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.539), width: 16 Scan time: 4.490 The best scores are: opt bits E(32554) CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1 ( 542) 3659 370.9 2.1e-102 >>CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1 (542 aa) initn: 3659 init1: 3659 opt: 3659 Z-score: 1952.0 bits: 370.9 E(32554): 2.1e-102 Smith-Waterman score: 3659; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542) 10 20 30 40 50 60 pF1KE3 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE 490 500 510 520 530 540 pF1KE3 KQ :: CCDS44 KQ 542 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:33:11 2016 done: Tue Nov 8 04:33:11 2016 Total Scan time: 4.490 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]