FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1107, 97 aa
  1>>>pF1KE1107 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8155+/-0.00054; mu= 7.5370+/- 0.033
 mean_var=73.5885+/-14.659, 0's: 0 Z-trim(114.3): 9  B-trim: 0 in 0/50
 Lambda= 0.149510
 statistics sampled from 14848 (14857) to 14848 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.456), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS44007.1 SPANXA2 gene_id:728712|Hs108|chrX      (  97)  642 146.3 2.8e-36
CCDS14674.1 SPANXA1 gene_id:30014|Hs108|chrX       (  97)  642 146.3 2.8e-36
CCDS14675.1 SPANXD gene_id:64648|Hs108|chrX        (  97)  604 138.1 8.3e-34
CCDS14673.1 SPANXC gene_id:64663|Hs108|chrX        (  97)  600 137.2 1.5e-33
CCDS44006.1 SPANXB1 gene_id:728695|Hs108|chrX      ( 103)  511 118.0 9.6e-28


>>CCDS44007.1 SPANXA2 gene_id:728712|Hs108|chrX           (97 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 764.7  bits: 146.3 E(32554): 2.8e-36
Smith-Waterman score: 642; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
       :::::::::::::::::::::::::::::::::::::
CCDS44 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
               70        80        90       

>>CCDS14674.1 SPANXA1 gene_id:30014|Hs108|chrX            (97 aa)
 initn: 642 init1: 642 opt: 642  Z-score: 764.7  bits: 146.3 E(32554): 2.8e-36
Smith-Waterman score: 642; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
       :::::::::::::::::::::::::::::::::::::
CCDS14 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
               70        80        90       

>>CCDS14675.1 SPANXD gene_id:64648|Hs108|chrX             (97 aa)
 initn: 604 init1: 604 opt: 604  Z-score: 720.4  bits: 138.1 E(32554): 8.3e-34
Smith-Waterman score: 604; 93.8% identity (97.9% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
       :::::::::::::::::::::::::::: .: :::::::::.::::::::::::::::::
CCDS14 MDKQSSAGGVKRSVPCDSNEANEMMPETSSGYSDPQPAPKKLKTSESSTILVVRYRRNFK
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
       :::::::.:::::.:::::::::::::::::::::::
CCDS14 RTSPEELVNDHARKNRINPLQMEEEEFMEIMVEIPAK
               70        80        90       

>>CCDS14673.1 SPANXC gene_id:64663|Hs108|chrX             (97 aa)
 initn: 600 init1: 600 opt: 600  Z-score: 715.8  bits: 137.2 E(32554): 1.5e-33
Smith-Waterman score: 600; 93.8% identity (96.9% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
       :::::::::::::::::::::::::::: .: :::::::::.:::::::::::::::: :
CCDS14 MDKQSSAGGVKRSVPCDSNEANEMMPETSSGYSDPQPAPKKLKTSESSTILVVRYRRNVK
               10        20        30        40        50        60

               70        80        90       
pF1KE1 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
       :::::::.:::::::::::::::::::::::::::::
CCDS14 RTSPEELVNDHARENRINPLQMEEEEFMEIMVEIPAK
               70        80        90       

>>CCDS44006.1 SPANXB1 gene_id:728695|Hs108|chrX           (103 aa)
 initn: 548 init1: 455 opt: 511  Z-score: 611.6  bits: 118.0 E(32554): 9.6e-28
Smith-Waterman score: 511; 79.6% identity (85.4% similar) in 103 aa overlap (1-97:1-103)

               10        20              30        40        50    
pF1KE1 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR
       : .:::.  .::::::.::::::       ::::::::::::::::::::::::::::::
CCDS44 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR
               10        20        30        40        50        60

           60        70        80        90       
pF1KE1 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
       :::: :::::::::::::::::::: :::::::.:: .: : :
CCDS44 YRRNVKRTSPEELLNDHARENRINPDQMEEEEFIEITTERPKK
               70        80        90       100   




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:49:47 2016 done: Sun Nov  6 10:49:47 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]