FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3710, 288 aa 1>>>pF1KE3710 288 - 288 aa - 288 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0944+/-0.00075; mu= 11.2950+/- 0.046 mean_var=210.7015+/-42.455, 0's: 0 Z-trim(116.5): 108 B-trim: 0 in 0/54 Lambda= 0.088357 statistics sampled from 17021 (17144) to 17021 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.527), width: 16 Scan time: 3.000 The best scores are: opt bits E(32554) CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX ( 288) 2003 266.9 1.3e-71 CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX ( 288) 1981 264.1 8.7e-71 >>CCDS43985.1 RHOXF2B gene_id:727940|Hs108|chrX (288 aa) initn: 2003 init1: 2003 opt: 2003 Z-score: 1399.4 bits: 266.9 E(32554): 1.3e-71 Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288) 10 20 30 40 50 60 pF1KE3 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 190 200 210 220 230 240 250 260 270 280 pF1KE3 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV :::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 250 260 270 280 >>CCDS14594.1 RHOXF2 gene_id:84528|Hs108|chrX (288 aa) initn: 1981 init1: 1981 opt: 1981 Z-score: 1384.3 bits: 264.1 E(32554): 8.7e-71 Smith-Waterman score: 1981; 99.3% identity (99.7% similar) in 288 aa overlap (1-288:1-288) 10 20 30 40 50 60 pF1KE3 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: CCDS14 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: CCDS14 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 190 200 210 220 230 240 250 260 270 280 pF1KE3 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV :::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 250 260 270 280 288 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:42:33 2016 done: Sun Nov 6 06:42:34 2016 Total Scan time: 3.000 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]