Result of FASTA (omim) for
pFN21AE1110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1110, 116 aa
1>>>pF1KE1110 116 - 116 aa - 116 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5750+/-0.000258; mu= 2.3543+/- 0.016
mean_var=174.1714+/-34.395, 0's: 0 Z-trim(126.4): 33 B-trim: 84 in 1/56
Lambda= 0.097182
statistics sampled from 52316 (52358) to 52316 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.886), E-opt: 0.2 (0.614), width: 16
Scan time: 5.400
The best scores are: opt bits E(85289)
NP_001091877 (OMIM: 300735) G antigen 2D [Homo sap ( 116) 847 128.6 2.2e-30
NP_036328 (OMIM: 300638) G antigen 2D [Homo sapien ( 116) 847 128.6 2.2e-30
NP_001120672 (OMIM: 300736) G antigen 2E [Homo sap ( 116) 847 128.6 2.2e-30
NP_001091881 (OMIM: 300726) G antigen 2B/2C [Homo ( 116) 838 127.4 5.2e-30
NP_001463 (OMIM: 300595) G antigen 2B/2C [Homo sap ( 116) 838 127.4 5.2e-30
NP_001120684 (OMIM: 300720) G antigen 2A/2B [Homo ( 116) 834 126.8 7.7e-30
NP_001091882 (OMIM: 300734) G antigen 13 [Homo sap ( 117) 827 125.8 1.5e-29
NP_001465 (OMIM: 300597) G antigen 4 [Homo sapiens ( 117) 823 125.3 2.3e-29
NP_001466 (OMIM: 300598) G antigen 5 [Homo sapiens ( 117) 817 124.4 4.1e-29
NP_001035753 (OMIM: 300594) G antigen 1 [Homo sapi ( 117) 815 124.1 4.9e-29
NP_001468 (OMIM: 300637) G antigen 12I [Homo sapie ( 117) 814 124.0 5.4e-29
NP_001091875 (OMIM: 300730) G antigen 12F [Homo sa ( 117) 814 124.0 5.4e-29
NP_001091879 (OMIM: 300731) G antigen 12G [Homo sa ( 117) 814 124.0 5.4e-29
NP_066946 (OMIM: 300601) G antigen 12G [Homo sapie ( 117) 814 124.0 5.4e-29
NP_001091876 (OMIM: 300733) G antigen 12J [Homo sa ( 117) 813 123.9 6e-29
NP_001467 (OMIM: 300599) G antigen 6 [Homo sapiens ( 117) 811 123.6 7.3e-29
NP_001091888 (OMIM: 300729) G antigen 12B/C/D/E [H ( 117) 803 122.5 1.6e-28
NP_001120671 (OMIM: 300728) G antigen 12B/C/D/E [H ( 117) 803 122.5 1.6e-28
NP_001091878 (OMIM: 300727) G antigen 12B/C/D/E [H ( 117) 803 122.5 1.6e-28
NP_001091880 (OMIM: 300732) G antigen 12H [Homo sa ( 117) 798 121.8 2.6e-28
NP_001091883 (OMIM: 300737) G antigen 10 [Homo sap ( 116) 782 119.5 1.2e-27
XP_011542198 (OMIM: 300594) PREDICTED: G antigen 1 ( 119) 779 119.1 1.6e-27
NP_573440 (OMIM: 300740) X antigen family member 3 ( 111) 369 61.6 3.2e-10
XP_011529070 (OMIM: 300740) PREDICTED: X antigen f ( 111) 369 61.6 3.2e-10
XP_011529071 (OMIM: 300740) PREDICTED: X antigen f ( 111) 369 61.6 3.2e-10
XP_011529072 (OMIM: 300740) PREDICTED: X antigen f ( 111) 369 61.6 3.2e-10
NP_570132 (OMIM: 300740) X antigen family member 3 ( 111) 369 61.6 3.2e-10
NP_570133 (OMIM: 300416) X antigen family member 2 ( 111) 319 54.6 4.1e-08
XP_011529138 (OMIM: 300416) PREDICTED: X antigen f ( 111) 319 54.6 4.1e-08
NP_003776 (OMIM: 300288) P antigen family member 1 ( 146) 272 48.1 4.8e-06
XP_011542300 (OMIM: 300288) PREDICTED: P antigen f ( 146) 272 48.1 4.8e-06
>>NP_001091877 (OMIM: 300735) G antigen 2D [Homo sapiens (116 aa)
initn: 847 init1: 847 opt: 847 Z-score: 666.5 bits: 128.6 E(85289): 2.2e-30
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_036328 (OMIM: 300638) G antigen 2D [Homo sapiens] (116 aa)
initn: 847 init1: 847 opt: 847 Z-score: 666.5 bits: 128.6 E(85289): 2.2e-30
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001120672 (OMIM: 300736) G antigen 2E [Homo sapiens (116 aa)
initn: 847 init1: 847 opt: 847 Z-score: 666.5 bits: 128.6 E(85289): 2.2e-30
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001091881 (OMIM: 300726) G antigen 2B/2C [Homo sapi (116 aa)
initn: 838 init1: 838 opt: 838 Z-score: 659.7 bits: 127.4 E(85289): 5.2e-30
Smith-Waterman score: 838; 99.1% identity (99.1% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 EGASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001463 (OMIM: 300595) G antigen 2B/2C [Homo sapiens (116 aa)
initn: 838 init1: 838 opt: 838 Z-score: 659.7 bits: 127.4 E(85289): 5.2e-30
Smith-Waterman score: 838; 99.1% identity (99.1% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 EGASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001120684 (OMIM: 300720) G antigen 2A/2B [Homo sapi (116 aa)
initn: 834 init1: 834 opt: 834 Z-score: 656.7 bits: 126.8 E(85289): 7.7e-30
Smith-Waterman score: 834; 98.3% identity (99.1% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE1 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 MSWRGRSTYRPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGQD
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 EGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 EGASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001091882 (OMIM: 300734) G antigen 13 [Homo sapiens (117 aa)
initn: 778 init1: 778 opt: 827 Z-score: 651.3 bits: 125.8 E(85289): 1.5e-29
Smith-Waterman score: 827; 98.3% identity (98.3% similar) in 117 aa overlap (1-116:1-117)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYYWPRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001465 (OMIM: 300597) G antigen 4 [Homo sapiens] (117 aa)
initn: 774 init1: 774 opt: 823 Z-score: 648.3 bits: 125.3 E(85289): 2.3e-29
Smith-Waterman score: 823; 97.4% identity (98.3% similar) in 117 aa overlap (1-116:1-117)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
::::::::: :::::::.:::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYYWPRPRRYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001466 (OMIM: 300598) G antigen 5 [Homo sapiens] (117 aa)
initn: 768 init1: 768 opt: 817 Z-score: 643.7 bits: 124.4 E(85289): 4.1e-29
Smith-Waterman score: 817; 96.6% identity (98.3% similar) in 117 aa overlap (1-116:1-117)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
::::::::: :::::::.:::.:::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYYWPRPRRYVQPPEVIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
70 80 90 100 110
>>NP_001035753 (OMIM: 300594) G antigen 1 [Homo sapiens] (117 aa)
initn: 766 init1: 766 opt: 815 Z-score: 642.2 bits: 124.1 E(85289): 4.9e-29
Smith-Waterman score: 815; 96.6% identity (97.4% similar) in 117 aa overlap (1-116:1-117)
10 20 30 40 50
pF1KE1 MSWRGRSTYR-PRPRRYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
::::::::: :::::::.:::::::::::::::::::::::::::::::::::::::::
NP_001 MSWRGRSTYYWPRPRRYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 DEGASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEGQSQC
70 80 90 100 110
116 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:51:00 2016 done: Sun Nov 6 10:51:01 2016
Total Scan time: 5.400 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]