FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1173, 606 aa 1>>>pF1KE1173 606 - 606 aa - 606 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6685+/-0.000976; mu= 17.2881+/- 0.059 mean_var=70.1700+/-13.787, 0's: 0 Z-trim(104.5): 23 B-trim: 0 in 0/50 Lambda= 0.153108 statistics sampled from 7920 (7925) to 7920 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.243), width: 16 Scan time: 3.230 The best scores are: opt bits E(32554) CCDS48017.1 SCAI gene_id:286205|Hs108|chr9 ( 606) 4030 899.7 0 CCDS43877.1 SCAI gene_id:286205|Hs108|chr9 ( 629) 3808 850.7 0 >>CCDS48017.1 SCAI gene_id:286205|Hs108|chr9 (606 aa) initn: 4030 init1: 4030 opt: 4030 Z-score: 4808.0 bits: 899.7 E(32554): 0 Smith-Waterman score: 4030; 99.8% identity (100.0% similar) in 606 aa overlap (1-606:1-606) 10 20 30 40 50 60 pF1KE1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFTLKEIMSSGGAEDDIPQGERKTVT ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: CCDS48 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSRTEFALKEIMSSGGAEDDIPQGERKTVT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 WQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYSQVNKEDRPELVVKKLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 YYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 LQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPAN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHKRNQSHKEMHCLHPGD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 LYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 NPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSIDQAFLQFFGDEFLRLL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 LTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFE 550 560 570 580 590 600 pF1KE1 NTIDDY :::::: CCDS48 NTIDDY >>CCDS43877.1 SCAI gene_id:286205|Hs108|chr9 (629 aa) initn: 4012 init1: 3808 opt: 3808 Z-score: 4542.7 bits: 850.7 E(32554): 0 Smith-Waterman score: 3970; 96.0% identity (96.3% similar) in 629 aa overlap (1-606:1-629) 10 20 30 pF1KE1 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRS-----------------------RTEFT :::::::::::::::::::::::::::::::: .:::. CCDS43 MVRGARQPQQPRSRLAPRLTGTVEKPPRKRRSSIRGSGDSSHSQSQGERYQHFTEKTEFA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LKEIMSSGGAEDDIPQGERKTVTDFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 YTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAI 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 RQRSYYSQVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFN 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 TEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLAD 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE1 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYL 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE1 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDI 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE1 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 INGDAIHKRNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLS 430 440 450 460 470 480 460 470 480 490 500 510 pF1KE1 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQL 490 500 510 520 530 540 520 530 540 550 560 570 pF1KE1 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LTHSRSIDQAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVE 550 560 570 580 590 600 580 590 600 pF1KE1 NPHLQKHILELASILDVRNVFFENTIDDY ::::::::::::::::::::::::::::: CCDS43 NPHLQKHILELASILDVRNVFFENTIDDY 610 620 606 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 10:52:53 2016 done: Sun Nov 6 10:52:54 2016 Total Scan time: 3.230 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]