FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8888, 201 aa 1>>>pF1KB8888 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6689+/-0.000668; mu= 6.6744+/- 0.041 mean_var=191.9310+/-38.136, 0's: 0 Z-trim(118.2): 41 B-trim: 0 in 0/56 Lambda= 0.092577 statistics sampled from 19086 (19130) to 19086 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.588), width: 16 Scan time: 2.210 The best scores are: opt bits E(32554) CCDS43779.1 SCX gene_id:642658|Hs108|chr8 ( 201) 1405 198.2 2.8e-51 CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20 ( 199) 516 79.5 1.5e-15 >>CCDS43779.1 SCX gene_id:642658|Hs108|chr8 (201 aa) initn: 1405 init1: 1405 opt: 1405 Z-score: 1034.1 bits: 198.2 E(32554): 2.8e-51 Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KB8 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 130 140 150 160 170 180 190 200 pF1KB8 FCLSNQRKLSKDRDRKTAIRS ::::::::::::::::::::: CCDS43 FCLSNQRKLSKDRDRKTAIRS 190 200 >>CCDS33432.1 TCF15 gene_id:6939|Hs108|chr20 (199 aa) initn: 509 init1: 409 opt: 516 Z-score: 392.5 bits: 79.5 E(32554): 1.5e-15 Smith-Waterman score: 612; 58.8% identity (73.4% similar) in 199 aa overlap (1-194:1-180) 10 20 30 40 50 pF1KB8 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEK-PCRVHAARC-GLQGARRR--- :.:: :::. .. :::.: :::::. :.:..::.. : : : ..::: CCDS33 MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQSFGC------CEGPEAARRGPGP 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 AGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIE .::::::::: .: : :::..:::::::::.:::::::::::::::::.:::::::: CCDS33 GGGRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 TLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP :.:::::::.::.:::: :.. ::::: :.:: :: : : :: . :: CCDS33 TVRLASSYIAHLANVLLLGDSADDGQPC------FRAA--GSAKGAVPA--AADG-GRQP 120 130 140 150 160 180 190 200 pF1KB8 KQICTFCLSNQRKLSKDRDRKTAIRS ..::::::::::: . :: CCDS33 RSICTFCLSNQRKGGGRRDLGGSCLKVRGVAPLRGPRR 170 180 190 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:48:50 2016 done: Tue Nov 8 04:48:50 2016 Total Scan time: 2.210 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]