FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5144, 92 aa
  1>>>pF1KE5144 92 - 92 aa - 92 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4963+/-0.000256; mu= 13.2519+/- 0.016
 mean_var=58.3854+/-11.227, 0's: 0 Z-trim(120.3): 8  B-trim: 44 in 1/54
 Lambda= 0.167850
 statistics sampled from 35341 (35349) to 35341 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.414), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(85289)
NP_001076580 (OMIM: 146110,152760) progonadoliberi (  92)  621 157.4   3e-39
NP_000816 (OMIM: 146110,152760) progonadoliberin-1 (  96)  621 157.4 3.1e-39


>>NP_001076580 (OMIM: 146110,152760) progonadoliberin-1   (92 aa)
 initn: 621 init1: 621 opt: 621  Z-score: 825.6  bits: 157.4 E(85289): 3e-39
Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92)

               10        20        30        40        50        60
pF1KE5 MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQR
               10        20        30        40        50        60

               70        80        90  
pF1KE5 FECTTHQPRSPLRDLKGALESLIEEETGQKKI
       ::::::::::::::::::::::::::::::::
NP_001 FECTTHQPRSPLRDLKGALESLIEEETGQKKI
               70        80        90  

>>NP_000816 (OMIM: 146110,152760) progonadoliberin-1 iso  (96 aa)
 initn: 621 init1: 621 opt: 621  Z-score: 825.4  bits: 157.4 E(85289): 3.1e-39
Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:5-96)

                   10        20        30        40        50      
pF1KE5     MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLA
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MCLRMKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLA
               10        20        30        40        50        60

         60        70        80        90  
pF1KE5 ETQRFECTTHQPRSPLRDLKGALESLIEEETGQKKI
       ::::::::::::::::::::::::::::::::::::
NP_000 ETQRFECTTHQPRSPLRDLKGALESLIEEETGQKKI
               70        80        90      




92 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:48:35 2016 done: Mon Nov  7 21:48:36 2016
 Total Scan time:  3.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]