FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5144, 92 aa 1>>>pF1KE5144 92 - 92 aa - 92 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6532+/-0.000504; mu= 12.2272+/- 0.030 mean_var=54.7932+/-10.630, 0's: 0 Z-trim(113.7): 10 B-trim: 0 in 0/52 Lambda= 0.173265 statistics sampled from 14338 (14344) to 14338 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.441), width: 16 Scan time: 1.270 The best scores are: opt bits E(32554) CCDS43725.1 GNRH1 gene_id:2796|Hs108|chr8 ( 92) 621 162.0 4.8e-41 >>CCDS43725.1 GNRH1 gene_id:2796|Hs108|chr8 (92 aa) initn: 621 init1: 621 opt: 621 Z-score: 850.4 bits: 162.0 E(32554): 4.8e-41 Smith-Waterman score: 621; 100.0% identity (100.0% similar) in 92 aa overlap (1-92:1-92) 10 20 30 40 50 60 pF1KE5 MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MKPIQKLLAGLILLTWCVEGCSSQHWSYGLRPGGKRDAENLIDSFQEIVKEVGQLAETQR 10 20 30 40 50 60 70 80 90 pF1KE5 FECTTHQPRSPLRDLKGALESLIEEETGQKKI :::::::::::::::::::::::::::::::: CCDS43 FECTTHQPRSPLRDLKGALESLIEEETGQKKI 70 80 90 92 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:48:34 2016 done: Mon Nov 7 21:48:35 2016 Total Scan time: 1.270 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]