FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1720, 227 aa
  1>>>pF1KE1720 227 - 227 aa - 227 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7123+/-0.000291; mu= 17.3053+/- 0.018
 mean_var=59.9728+/-12.217, 0's: 0 Z-trim(117.6): 36  B-trim: 769 in 1/52
 Lambda= 0.165614
 statistics sampled from 29780 (29817) to 29780 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.35), width:  16
 Scan time:  5.470

The best scores are:                                      opt bits E(85289)
XP_011542716 (OMIM: 612473) PREDICTED: phosphatidy ( 227) 1578 384.8 6.4e-107
NP_659399 (OMIM: 612473) phosphatidylethanolamine- ( 227) 1578 384.8 6.4e-107
XP_016868592 (OMIM: 612473) PREDICTED: phosphatidy ( 169)  298 78.9 5.9e-15
NP_002558 (OMIM: 604591) phosphatidylethanolamine- ( 187)  273 72.9   4e-13


>>XP_011542716 (OMIM: 612473) PREDICTED: phosphatidyleth  (227 aa)
 initn: 1578 init1: 1578 opt: 1578  Z-score: 2040.5  bits: 384.8 E(85289): 6.4e-107
Smith-Waterman score: 1578; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE1 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
              130       140       150       160       170       180

              190       200       210       220       
pF1KE1 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
              190       200       210       220       

>>NP_659399 (OMIM: 612473) phosphatidylethanolamine-bind  (227 aa)
 initn: 1578 init1: 1578 opt: 1578  Z-score: 2040.5  bits: 384.8 E(85289): 6.4e-107
Smith-Waterman score: 1578; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE1 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
              130       140       150       160       170       180

              190       200       210       220       
pF1KE1 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_659 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
              190       200       210       220       

>>XP_016868592 (OMIM: 612473) PREDICTED: phosphatidyleth  (169 aa)
 initn: 298 init1: 298 opt: 298  Z-score: 389.4  bits: 78.9 E(85289): 5.9e-15
Smith-Waterman score: 298; 100.0% identity (100.0% similar) in 44 aa overlap (1-44:1-44)

               10        20        30        40        50        60
pF1KE1 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
       ::::::::::::::::::::::::::::::::::::::::::::                
XP_016 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQFRAPRLESRGPILRTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
                                                                   
XP_016 RIHQQAPSLRKRLMTLRLHARKMSFDFKPSSQKRSFVFIVTEDFCLEESIMNDDEMKNAS
               70        80        90       100       110       120

>>NP_002558 (OMIM: 604591) phosphatidylethanolamine-bind  (187 aa)
 initn: 239 init1: 170 opt: 273  Z-score: 356.5  bits: 72.9 E(85289): 4e-13
Smith-Waterman score: 274; 32.7% identity (59.1% similar) in 159 aa overlap (52-206:36-180)

              30        40        50        60        70        80 
pF1KE1 GDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQKITSWMEPIVKF
                                     :::..   ..:   . :    ::       
NP_002 SKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV---LTPTQVKNRPTSISW-------
          10        20        30        40           50            

              90       100       110       120       130       140 
pF1KE1 PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP
        :  .:  : ::..::::::: .:. : :.:.::...:: :...: .    :: : . .:
NP_002 DGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVGSGP
          60        70        80        90       100           110 

             150       160           170       180       190       
pF1KE1 PAHSGFHRYQFFVYLQEGKVISLLP----KENKTRGSWKMDRFLNRFHLGEPEASTQFMT
       :  .:.::: ..:: :.  .    :    . .  ::..:.  : ....:  : :.: ...
NP_002 PKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQA
             120       130       140       150       160       170 

       200       210       220       
pF1KE1 QNYQDSPTLQAPRERASEPKHKNQAEIAAC
       .  .  : :                     
NP_002 EWDDYVPKLYEQLSGK              
             180                     




227 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:55:28 2016 done: Sun Nov  6 10:55:29 2016
 Total Scan time:  5.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]