FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1720, 227 aa
  1>>>pF1KE1720 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8184+/-0.000636; mu= 16.6985+/- 0.038
 mean_var=59.9026+/-12.028, 0's: 0 Z-trim(110.9): 13  B-trim: 240 in 1/48
 Lambda= 0.165711
 statistics sampled from 11936 (11946) to 11936 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS43724.1 PEBP4 gene_id:157310|Hs108|chr8        ( 227) 1578 384.9 2.2e-107
CCDS9187.1 PEBP1 gene_id:5037|Hs108|chr12          ( 187)  273 72.9 1.6e-13


>>CCDS43724.1 PEBP4 gene_id:157310|Hs108|chr8             (227 aa)
 initn: 1578 init1: 1578 opt: 1578  Z-score: 2041.3  bits: 384.9 E(32554): 2.2e-107
Smith-Waterman score: 1578; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE1 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
              130       140       150       160       170       180

              190       200       210       220       
pF1KE1 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
              190       200       210       220       

>>CCDS9187.1 PEBP1 gene_id:5037|Hs108|chr12               (187 aa)
 initn: 239 init1: 170 opt: 273  Z-score: 356.4  bits: 72.9 E(32554): 1.6e-13
Smith-Waterman score: 274; 32.7% identity (59.1% similar) in 159 aa overlap (52-206:36-180)

              30        40        50        60        70        80 
pF1KE1 GDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKVVPDCNNYRQKITSWMEPIVKF
                                     :::..   ..:   . :    ::       
CCDS91 SKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKV---LTPTQVKNRPTSISW-------
          10        20        30        40           50            

              90       100       110       120       130       140 
pF1KE1 PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP
        :  .:  : ::..::::::: .:. : :.:.::...:: :...: .    :: : . .:
CCDS91 DGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVGSGP
          60        70        80        90       100           110 

             150       160           170       180       190       
pF1KE1 PAHSGFHRYQFFVYLQEGKVISLLP----KENKTRGSWKMDRFLNRFHLGEPEASTQFMT
       :  .:.::: ..:: :.  .    :    . .  ::..:.  : ....:  : :.: ...
CCDS91 PKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQA
             120       130       140       150       160       170 

       200       210       220       
pF1KE1 QNYQDSPTLQAPRERASEPKHKNQAEIAAC
       .  .  : :                     
CCDS91 EWDDYVPKLYEQLSGK              
             180                     




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:55:28 2016 done: Sun Nov  6 10:55:28 2016
 Total Scan time:  1.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]