FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0612, 363 aa 1>>>pF1KE0612 363 - 363 aa - 363 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.3501+/-0.000839; mu= 2.0055+/- 0.051 mean_var=315.6413+/-65.269, 0's: 0 Z-trim(117.6): 154 B-trim: 0 in 0/52 Lambda= 0.072190 statistics sampled from 18213 (18383) to 18213 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.565), width: 16 Scan time: 2.900 The best scores are: opt bits E(32554) CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7 ( 363) 2466 269.5 3.1e-72 CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2 ( 348) 700 85.6 7e-17 >>CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7 (363 aa) initn: 2466 init1: 2466 opt: 2466 Z-score: 1410.3 bits: 269.5 E(32554): 3.1e-72 Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG 310 320 330 340 350 360 pF1KE0 ARP ::: CCDS43 ARP >>CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2 (348 aa) initn: 801 init1: 639 opt: 700 Z-score: 416.5 bits: 85.6 E(32554): 7e-17 Smith-Waterman score: 947; 51.9% identity (66.7% similar) in 360 aa overlap (20-363:17-348) 10 20 30 40 50 pF1KE0 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPP-PRSGHLLYTGYPMFMPYRPLVLPQ : .:::::::::: :: : ::..::::::::::::.::: CCDS25 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPP 10 20 30 40 50 60 70 80 90 100 110 pF1KE0 ALAPAP-LPAG-----LPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPD : : :: . ::: : .. . : . ::..:.:.. :::..: .: : CCDS25 PPPPPPALPQAALQPALPPAHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPG 60 70 80 90 100 110 120 130 140 150 160 pF1KE0 AFYG-PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPP .: . ::. :::: : .: ::: :... : : : . .:. CCDS25 GFSASPQHQEAAAARKFAP----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLL 120 130 140 150 160 170 180 190 200 210 220 pF1KE0 PPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGP .:: :: . . ..:: :.: :: : .::. . .:. : :.. : CCDS25 AFSAAETVQASLVGAVRGQGKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQ 170 180 190 200 210 230 240 250 260 270 280 pF1KE0 GALLGPKPKLKGSLGTGAEEGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKK .: : : . :: : . :: :. ::.::::::::::::::::::::::: CCDS25 AAHKEEDP------GHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKK 220 230 240 250 260 270 290 300 310 320 330 340 pF1KE0 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVH ::::::::::::::::::::::::::::::::::.::::..:..::: :::::::::::: CCDS25 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVH 280 290 300 310 320 330 350 360 pF1KE0 VNRFAVRSQHQQMEQGARP :.:::.::::::.:: ::: CCDS25 VSRFAIRSQHQQLEQ-ARP 340 363 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:28:15 2016 done: Tue Nov 8 04:28:16 2016 Total Scan time: 2.900 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]