FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3955, 755 aa 1>>>pF1KE3955 755 - 755 aa - 755 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5291+/-0.000988; mu= 12.1828+/- 0.059 mean_var=213.4315+/-44.273, 0's: 0 Z-trim(112.6): 79 B-trim: 11 in 1/51 Lambda= 0.087790 statistics sampled from 13288 (13361) to 13288 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.41), width: 16 Scan time: 4.760 The best scores are: opt bits E(32554) CCDS43625.1 TRIM56 gene_id:81844|Hs108|chr7 ( 755) 5161 667.0 3e-191 >>CCDS43625.1 TRIM56 gene_id:81844|Hs108|chr7 (755 aa) initn: 5161 init1: 5161 opt: 5161 Z-score: 3547.1 bits: 667.0 E(32554): 3e-191 Smith-Waterman score: 5161; 100.0% identity (100.0% similar) in 755 aa overlap (1-755:1-755) 10 20 30 40 50 60 pF1KE3 MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEGLLAGVDNNLVELEAARRVEKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 CQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEGLLAGVDNNLVELEAARRVEKEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAELEGREQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQLRAHVEAAEEAARERLAELEGREQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 VARAAAAFARRVLSLGREAEILSLEGAIAQRLRQLQGCPWAPGPAPCLLPQLELHPGLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VARAAAAFARRVLSLGREAEILSLEGAIAQRLRQLQGCPWAPGPAPCLLPQLELHPGLLD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 KNCHLLRLSFEEQQPQKDGGKDGAGTQGGEESQSRREDEPKTERQGGVQPQAGDGAQTPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KNCHLLRLSFEEQQPQKDGGKDGAGTQGGEESQSRREDEPKTERQGGVQPQAGDGAQTPK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 EEKAQTTREEGAQTLEEDRAQTPHEDGGPQPHRGGRPNKKKKFKGRLKSISREPSPALGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EEKAQTTREEGAQTLEEDRAQTPHEDGGPQPHRGGRPNKKKKFKGRLKSISREPSPALGP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 NLDGSGLLPRPIFYCSFPTRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLNGDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 NLDGSGLLPRPIFYCSFPTRMPGDKRSPRITGLCPFGPREILVADEQNRALKRFSLNGDY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 KGTVPVPEGCSPCSVAALQSAVAFSASARLYLINPNGEVQWRRALSLSQASHAVAALPSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KGTVPVPEGCSPCSVAALQSAVAFSASARLYLINPNGEVQWRRALSLSQASHAVAALPSG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 DRVAVSVAGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DRVAVSVAGHVEVYNMEGSLATRFIPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVI 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 CDGLGQVVGEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 CDGLGQVVGEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYH 670 680 690 700 710 720 730 740 750 pF1KE3 GLEKPRVTTMVDGRYLVVSLSNGTIHIFRVRSPDS ::::::::::::::::::::::::::::::::::: CCDS43 GLEKPRVTTMVDGRYLVVSLSNGTIHIFRVRSPDS 730 740 750 755 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:36:39 2016 done: Sun Nov 6 08:36:39 2016 Total Scan time: 4.760 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]