FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2191, 367 aa
  1>>>pF1KE2191 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5142+/-0.000798; mu= 16.1141+/- 0.048
 mean_var=78.0820+/-15.343, 0's: 0 Z-trim(108.1): 9  B-trim: 0 in 0/52
 Lambda= 0.145144
 statistics sampled from 10020 (10024) to 10020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.308), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS43615.1 RBM48 gene_id:84060|Hs108|chr7         ( 367) 2458 524.1 7.6e-149


>>CCDS43615.1 RBM48 gene_id:84060|Hs108|chr7              (367 aa)
 initn: 2458 init1: 2458 opt: 2458  Z-score: 2785.8  bits: 524.1 E(32554): 7.6e-149
Smith-Waterman score: 2458; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KE2 MASSGGELGSLFDHHVQRAVCDTRAKYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MASSGGELGSLFDHHVQRAVCDTRAKYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 YAPEFETVEETRKKLQMRKAYVVKTTENKDHYVTKKKLVTEHKDTEDFRQDFHSEMSGFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YAPEFETVEETRKKLQMRKAYVVKTTENKDHYVTKKKLVTEHKDTEDFRQDFHSEMSGFC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 KAALNTSAGNSNPYLPYSCELPLCYFSSKCMCSSGGPVDRAPDSSKDGRNHHKTMGHYNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KAALNTSAGNSNPYLPYSCELPLCYFSSKCMCSSGGPVDRAPDSSKDGRNHHKTMGHYNH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NDSLRKTQINSLKNSVACPGAQKAITSSEAVDRFMPRTTQLQERKRRREDDRKLGTFLQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NDSLRKTQINSLKNSVACPGAQKAITSSEAVDRFMPRTTQLQERKRRREDDRKLGTFLQT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NPTGNEIMIGPLLPDISKVDMHDDSLNTTANLIRHKLKEVISSVPKPPEDKPEDVHTSHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NPTGNEIMIGPLLPDISKVDMHDDSLNTTANLIRHKLKEVISSVPKPPEDKPEDVHTSHP
              310       320       330       340       350       360

              
pF1KE2 LKQRRRI
       :::::::
CCDS43 LKQRRRI
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:13:28 2016 done: Tue Nov  8 17:13:29 2016
 Total Scan time:  1.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]