FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6397, 223 aa 1>>>pF1KE6397 223 - 223 aa - 223 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7747+/-0.000865; mu= -0.3209+/- 0.052 mean_var=202.1591+/-41.206, 0's: 0 Z-trim(115.0): 7 B-trim: 148 in 1/52 Lambda= 0.090204 statistics sampled from 15507 (15510) to 15507 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.476), width: 16 Scan time: 1.440 The best scores are: opt bits E(32554) CCDS43603.1 RHBDD2 gene_id:57414|Hs108|chr7 ( 223) 1525 209.8 1.1e-54 CCDS43602.1 RHBDD2 gene_id:57414|Hs108|chr7 ( 364) 1525 210.0 1.6e-54 >>CCDS43603.1 RHBDD2 gene_id:57414|Hs108|chr7 (223 aa) initn: 1525 init1: 1525 opt: 1525 Z-score: 1095.2 bits: 209.8 E(32554): 1.1e-54 Smith-Waterman score: 1525; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE6 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP 130 140 150 160 170 180 190 200 210 220 pF1KE6 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP ::::::::::::::::::::::::::::::::::::::::::: CCDS43 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP 190 200 210 220 >>CCDS43602.1 RHBDD2 gene_id:57414|Hs108|chr7 (364 aa) initn: 1525 init1: 1525 opt: 1525 Z-score: 1092.2 bits: 210.0 E(32554): 1.6e-54 Smith-Waterman score: 1525; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:142-364) 10 20 30 pF1KE6 MLGVTTVRSRMRRALVFGMVVPSVLVPWLL :::::::::::::::::::::::::::::: CCDS43 IIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLL 120 130 140 150 160 170 40 50 60 70 80 90 pF1KE6 LGASWLIPQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LGASWLIPQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKY 180 190 200 210 220 230 100 110 120 130 140 150 pF1KE6 VSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHM 240 250 260 270 280 290 160 170 180 190 200 210 pF1KE6 PTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPG 300 310 320 330 340 350 220 pF1KE6 AAGSKESSRVPMP ::::::::::::: CCDS43 AAGSKESSRVPMP 360 223 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:43:11 2016 done: Tue Nov 8 12:43:11 2016 Total Scan time: 1.440 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]