FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5727, 707 aa 1>>>pF1KE5727 707 - 707 aa - 707 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.4216+/-0.00106; mu= -4.8148+/- 0.063 mean_var=590.8584+/-145.974, 0's: 0 Z-trim(116.7): 274 B-trim: 817 in 1/55 Lambda= 0.052763 statistics sampled from 16933 (17353) to 16933 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.533), width: 16 Scan time: 3.830 The best scores are: opt bits E(32554) CCDS43487.1 PRDM13 gene_id:59336|Hs108|chr6 ( 707) 5006 396.4 7.7e-110 >>CCDS43487.1 PRDM13 gene_id:59336|Hs108|chr6 (707 aa) initn: 5006 init1: 5006 opt: 5006 Z-score: 2085.5 bits: 396.4 E(32554): 7.7e-110 Smith-Waterman score: 5006; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707) 10 20 30 40 50 60 pF1KE5 MHGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MHGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDES 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVFSGGGGGAFLHHEHAARQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 IPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVFSGGGGGAFLHHEHAARQG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 AVPAADGLGLSPKPPAPDFAAPSQAGTLRPHPLGPPPVQACGAREGIKREASSAPSATSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 AVPAADGLGLSPKPPAPDFAAPSQAGTLRPHPLGPPPVQACGAREGIKREASSAPSATSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 TPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 TPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGAGHHHHHHAHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGAGHHHHHHAHH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 HHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPEEASAFKHVERAPPAAAALPGARY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 HHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPEEASAFKHVERAPPAAAALPGARY 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 AQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAFTVYNGELLYGSPATTAYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 AQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAFTVYNGELLYGSPATTAYY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 PLKLHFGGLLKYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQQLSEMAAGKGRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PLKLHFGGLLKYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQQLSEMAAGKGRGR 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 LDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKP 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 LKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHPGQSLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHPGQSLLA 610 620 630 640 650 660 670 680 690 700 pF1KE5 KAGDGPGAEPGYPPEPGDPKSDDSDVDVCFTDDQSDPEVGGGGERDL ::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KAGDGPGAEPGYPPEPGDPKSDDSDVDVCFTDDQSDPEVGGGGERDL 670 680 690 700 707 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:07:27 2016 done: Tue Nov 8 06:07:27 2016 Total Scan time: 3.830 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]