Result of FASTA (omim) for
pFN21AE1907
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1907, 442 aa
1>>>pF1KE1907 442 - 442 aa - 442 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5628+/-0.000406; mu= 16.3093+/- 0.025
mean_var=86.0324+/-17.745, 0's: 0 Z-trim(113.9): 156 B-trim: 1009 in 1/50
Lambda= 0.138275
statistics sampled from 23319 (23505) to 23319 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.276), width: 16
Scan time: 8.460
The best scores are: opt bits E(85289)
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 3030 614.7 1.5e-175
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 2648 538.5 1.3e-152
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 2631 535.1 1.2e-151
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 2631 535.1 1.4e-151
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 2353 479.6 5.6e-135
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 2283 465.6 8.9e-131
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 2281 465.3 1.4e-130
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 2231 455.2 1.1e-127
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 1930 395.2 1.5e-109
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 1919 393.0 6.8e-109
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 1886 386.4 6.5e-107
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 1868 382.8 7.8e-106
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 1868 382.9 8.3e-106
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1847 378.6 1.3e-104
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 1847 378.6 1.4e-104
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 1832 375.7 1.1e-103
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 1829 375.1 1.7e-103
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1732 355.7 1.1e-97
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1731 355.5 1.3e-97
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1681 345.5 1.2e-94
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1650 339.4 1e-92
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1650 339.4 1e-92
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1554 320.0 3.9e-87
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1380 285.4 1.2e-76
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 852 180.0 6e-45
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 852 180.0 6e-45
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 773 164.4 4.2e-40
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 716 153.0 1.1e-36
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 715 152.8 1.3e-36
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 707 151.2 3.9e-36
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 668 143.4 8.3e-34
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 652 140.2 7.1e-33
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 572 124.2 4.1e-28
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 571 124.0 4.6e-28
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 505 110.9 5.6e-24
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 505 110.9 5.6e-24
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 501 110.1 9e-24
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 492 108.4 3.5e-23
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 480 105.8 1.3e-22
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 474 104.6 2.7e-22
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 476 105.2 3.2e-22
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 442 98.4 3.3e-20
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 439 97.7 4.3e-20
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 398 89.3 8.1e-18
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 395 88.9 1.7e-17
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 389 87.6 3.7e-17
NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235) 389 87.6 3.7e-17
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 365 82.9 1e-15
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 363 82.5 1.4e-15
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 363 82.6 1.7e-15
>>NP_001091949 (OMIM: 143110) HLA class I histocompatibi (442 aa)
initn: 3030 init1: 3030 opt: 3030 Z-score: 3272.7 bits: 614.7 E(85289): 1.5e-175
Smith-Waterman score: 3030; 99.8% identity (99.8% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_001 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
370 380 390 400 410 420
430 440
pF1KE1 GRSFLLRSWHHLMKRVQIKIFD
::::::::::::::::::::::
NP_001 GRSFLLRSWHHLMKRVQIKIFD
430 440
>>XP_016866301 (OMIM: 143110) PREDICTED: HLA class I his (420 aa)
initn: 2636 init1: 2636 opt: 2648 Z-score: 2861.1 bits: 538.5 E(85289): 1.3e-152
Smith-Waterman score: 2648; 95.2% identity (96.4% similar) in 413 aa overlap (1-409:1-410)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
310 320 330 340 350 360
370 380 390 400 410
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFL----WLWTSFNTAFLALQSLRFGF
:::::::::::::::::::::::::: : : : .::. ..: :. :
XP_016 SLFLLGVLFQGYLGCLRSHSVLGRRKNG---ITCFRDEAKYLWNLLHTEFIILFPLMPLT
370 380 390 400 410
420 430 440
pF1KE1 GFRRGRSFLLRSWHHLMKRVQIKIFD
XP_016 FFL
420
>>XP_016866302 (OMIM: 143110) PREDICTED: HLA class I his (388 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 2843.3 bits: 535.1 E(85289): 1.2e-151
Smith-Waterman score: 2631; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
::::::::::::::::::::::::::
XP_016 SLFLLGVLFQGYLGCLRSHSVLGRRKES
370 380
>>XP_016866299 (OMIM: 143110) PREDICTED: HLA class I his (435 aa)
initn: 2631 init1: 2631 opt: 2631 Z-score: 2842.6 bits: 535.1 E(85289): 1.4e-151
Smith-Waterman score: 2631; 99.7% identity (99.7% similar) in 386 aa overlap (1-386:1-386)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
::::::::::::::::::::::::::
XP_016 SLFLLGVLFQGYLGCLRSHSVLGRRKAQLLSVSTSQTSILIQEQFSHQRTLAMSGKMFCC
370 380 390 400 410 420
>>NP_061823 (OMIM: 143110) HLA class I histocompatibilit (346 aa)
initn: 2353 init1: 2353 opt: 2353 Z-score: 2544.2 bits: 479.6 E(85289): 5.6e-135
Smith-Waterman score: 2353; 99.7% identity (99.7% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_061 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
:::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV
310 320 330 340
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
>>XP_011512866 (OMIM: 143110) PREDICTED: HLA class I his (343 aa)
initn: 2283 init1: 2283 opt: 2283 Z-score: 2468.8 bits: 465.6 E(85289): 8.9e-131
Smith-Waterman score: 2283; 99.1% identity (99.4% similar) in 336 aa overlap (1-336:1-336)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_011 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
:::::::::::::::::::::::::::::::::: .
XP_011 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSGKLTHTGVQ
310 320 330 340
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
>>XP_016866300 (OMIM: 143110) PREDICTED: HLA class I his (431 aa)
initn: 2281 init1: 2281 opt: 2281 Z-score: 2465.3 bits: 465.3 E(85289): 1.4e-130
Smith-Waterman score: 2926; 97.3% identity (97.3% similar) in 442 aa overlap (1-442:1-431)
10 20 30 40 50 60
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQ
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_016 DGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMITWWS
:::::::::::::::::::::::::::::::::: :::::::::::::::
XP_016 PTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSS-----------AYSVVSGNLMITWWS
310 320 330 340
370 380 390 400 410 420
pF1KE1 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRR
350 360 370 380 390 400
430 440
pF1KE1 GRSFLLRSWHHLMKRVQIKIFD
::::::::::::::::::::::
XP_016 GRSFLLRSWHHLMKRVQIKIFD
410 420 430
>>XP_016866303 (OMIM: 143110) PREDICTED: HLA class I his (324 aa)
initn: 2231 init1: 2231 opt: 2231 Z-score: 2413.1 bits: 455.2 E(85289): 1.1e-127
Smith-Waterman score: 2231; 99.7% identity (99.7% similar) in 324 aa overlap (119-442:1-324)
90 100 110 120 130 140
pF1KE1 KANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLN
::::::::::::::::::::::::::::::
XP_016 MNGCDMGPDGRLLRGYHQHAYDGKDYISLN
10 20 30
150 160 170 180 190 200
pF1KE1 EDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKA
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE1 HVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAV
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE1 VVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVM
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE1 WRKKSSDRNRGSYSQAAAYSVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WRKKSSDRNRGSYSQAAAYSVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVG
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE1 DMWILFFLWLWTSFNTAFLALQSLRFGFGFRRGRSFLLRSWHHLMKRVQIKIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMWILFFLWLWTSFNTAFLALQSLRFGFGFRRGRSFLLRSWHHLMKRVQIKIFD
280 290 300 310 320
>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa)
initn: 1956 init1: 1930 opt: 1930 Z-score: 2087.9 bits: 395.2 E(85289): 1.5e-109
Smith-Waterman score: 1930; 79.0% identity (91.5% similar) in 353 aa overlap (1-353:4-356)
10 20 30 40 50
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF
::::.::::::::::::.:::::::.::: :.::::::::::.::: :::::::.::
NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
::::: ::::: ::.:::::.::. : .::..::::: : .: ::::::::::.:
NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
: :::.: :::.::::.: ::::::::.:::::::::::: .::::.: .:: . ::..
NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
:.::.: :.: ::::::::::::::.::::.:..::::::::::::::::::::::::::
NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQ
::::::.::::::::::::::::::::::::::::::::::::::::::::.:: ::::
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT
: :::::::::.::::.::::.:::::::::::.:::::. :::.:::. . ..:.
NP_002 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFG
NP_002 TACKV
>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa)
initn: 1955 init1: 1919 opt: 1919 Z-score: 2076.0 bits: 393.0 E(85289): 6.8e-109
Smith-Waterman score: 1919; 78.5% identity (91.2% similar) in 353 aa overlap (1-353:4-356)
10 20 30 40 50
pF1KE1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF
::::.::::::::::::.:::::::.::: :.::::::::::.::: :::::::.::
NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
::::: .:::: ::.:::::.::. : ::..::::. : .: ::::: ::::.:
NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE1 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
: :::.:::::.::::.: ::::::::.:::::::::::: .::::.: .:: . ::.
NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE1 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
:.::::.:.. ::::::::::::::.::::.:..::::::::::::::::::::::::::
NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE1 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQ
::::::.::::::::::::::::::::::::::::::::::::::::::::.:: ::::
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE1 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT
: :::::::::.::::.::::.:::::::::::.:::::. :::.:::. . ..:.
NP_001 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE1 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFG
NP_001 TACKV
442 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:57:24 2016 done: Sun Nov 6 10:57:25 2016
Total Scan time: 8.460 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]