FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1956, 513 aa 1>>>pF1KE1956 513 - 513 aa - 513 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1077+/-0.00043; mu= 16.0777+/- 0.026 mean_var=135.5214+/-28.041, 0's: 0 Z-trim(115.2): 19 B-trim: 1053 in 1/49 Lambda= 0.110172 statistics sampled from 25462 (25478) to 25462 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.299), width: 16 Scan time: 8.700 The best scores are: opt bits E(85289) NP_079212 (OMIM: 611792) zinc finger CCHC domain-c ( 513) 3621 587.5 3.1e-167 XP_016863617 (OMIM: 611792) PREDICTED: zinc finger ( 468) 3039 495.0 2.1e-139 XP_011512137 (OMIM: 611792) PREDICTED: zinc finger ( 528) 2430 398.2 3.1e-110 NP_001305077 (OMIM: 611792) zinc finger CCHC domai ( 339) 2341 383.9 4.1e-106 XP_016863618 (OMIM: 611792) PREDICTED: zinc finger ( 429) 1750 290.0 9.2e-78 >>NP_079212 (OMIM: 611792) zinc finger CCHC domain-conta (513 aa) initn: 3621 init1: 3621 opt: 3621 Z-score: 3123.3 bits: 587.5 E(85289): 3.1e-167 Smith-Waterman score: 3621; 99.6% identity (99.8% similar) in 513 aa overlap (1-513:1-513) 10 20 30 40 50 60 pF1KE1 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 HYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCFLCKKCVKP ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: NP_079 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDGRKWNHCFLCKKCVKP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN 430 440 450 460 470 480 490 500 510 pF1KE1 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS ::::::::::::::::::::::::::::::::: NP_079 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS 490 500 510 >>XP_016863617 (OMIM: 611792) PREDICTED: zinc finger CCH (468 aa) initn: 3039 init1: 3039 opt: 3039 Z-score: 2623.9 bits: 495.0 E(85289): 2.1e-139 Smith-Waterman score: 3039; 99.5% identity (99.8% similar) in 431 aa overlap (83-513:38-468) 60 70 80 90 100 110 pF1KE1 QGKEETRRFYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYL :::::::::::::::::::::::::::::: XP_016 QRAAQGAGEAREWRWCFLWILPSPPRCALTLSGARLAAREAHNRRCQPPLSRTQCVERYL 10 20 30 40 50 60 120 130 140 150 160 170 pF1KE1 KFIELPLTQRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KFIELPLTQRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQ 70 80 90 100 110 120 180 190 200 210 220 230 pF1KE1 YLFADRSCQFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YLFADRSCQFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQ 130 140 150 160 170 180 240 250 260 270 280 290 pF1KE1 FYMEDSFCRYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKK ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FYMEDSFCHYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKK 190 200 210 220 230 240 300 310 320 330 340 350 pF1KE1 LIAMWKEGQSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LIAMWKEGQSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTG 250 260 270 280 290 300 360 370 380 390 400 410 pF1KE1 RKQSPVRIFTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCF ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: XP_016 RKQSPVRIFTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDGRKWNHCF 310 320 330 340 350 360 420 430 440 450 460 470 pF1KE1 LCKKCVKPSWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LCKKCVKPSWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVR 370 380 390 400 410 420 480 490 500 510 pF1KE1 KQKQRKSNKMKMETTKGQSMNHTSATRRKKRRERAHQYLGS ::::::::::::::::::::::::::::::::::::::::: XP_016 KQKQRKSNKMKMETTKGQSMNHTSATRRKKRRERAHQYLGS 430 440 450 460 >>XP_011512137 (OMIM: 611792) PREDICTED: zinc finger CCH (528 aa) initn: 2410 init1: 2341 opt: 2430 Z-score: 2100.1 bits: 398.2 E(85289): 3.1e-110 Smith-Waterman score: 3581; 96.8% identity (97.0% similar) in 528 aa overlap (1-513:1-528) 10 20 30 40 50 60 pF1KE1 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG 250 260 270 280 290 300 310 320 330 340 pF1KE1 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQ---------------VDYDNHAL ::::::::::::::::::::::::::::::::::::: :::::::: XP_011 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQAIPFFLDYRLFLPFKVDYDNHAL 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE1 YKHGKTGRKQSPVRIFTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDG :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: XP_011 YKHGKTGRKQSPVRIFTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDG 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE1 RKWNHCFLCKKCVKPSWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RKWNHCFLCKKCVKPSWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSK 430 440 450 460 470 480 470 480 490 500 510 pF1KE1 RANKAVRKQKQRKSNKMKMETTKGQSMNHTSATRRKKRRERAHQYLGS :::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RANKAVRKQKQRKSNKMKMETTKGQSMNHTSATRRKKRRERAHQYLGS 490 500 510 520 >>NP_001305077 (OMIM: 611792) zinc finger CCHC domain-co (339 aa) initn: 2341 init1: 2341 opt: 2341 Z-score: 2026.0 bits: 383.9 E(85289): 4.1e-106 Smith-Waterman score: 2341; 99.7% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE1 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI ::::::::::::::::::::::::::::::::::::: NP_001 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQGI 310 320 330 370 380 390 400 410 420 pF1KE1 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCFLCKKCVKP >>XP_016863618 (OMIM: 611792) PREDICTED: zinc finger CCH (429 aa) initn: 1819 init1: 1750 opt: 1750 Z-score: 1517.1 bits: 290.0 E(85289): 9.2e-78 Smith-Waterman score: 2852; 83.2% identity (83.4% similar) in 513 aa overlap (1-513:1-429) 10 20 30 40 50 60 pF1KE1 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FYACSACRDRKDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QFLVDLLSALGFRRVLCVGTPRLHELIKLTASGDKKSNIKSLLLDIDFRYSQFYMEDSFC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFGGLVEPLAITFKKLIAMWKEG .:::::::::::: XP_016 HYNMFNHHFFDGK----------------------------------------------- 250 310 320 330 340 350 360 pF1KE1 QSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGKTGRKQSPVRI ::::::::::::::::::::::: XP_016 -------------------------------------VDYDNHALYKHGKTGRKQSPVRI 260 270 370 380 390 400 410 420 pF1KE1 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCEHCNSCTSKDGRKWNHCFLCKKCVKP ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: XP_016 FTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDGRKWNHCFLCKKCVKP 280 290 300 310 320 330 430 440 450 460 470 480 pF1KE1 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSN 340 350 360 370 380 390 490 500 510 pF1KE1 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS ::::::::::::::::::::::::::::::::: XP_016 KMKMETTKGQSMNHTSATRRKKRRERAHQYLGS 400 410 420 513 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:43:05 2016 done: Sun Nov 6 05:43:07 2016 Total Scan time: 8.700 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]