Result of FASTA (ccds) for pFN21AE3396
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3396, 1275 aa
  1>>>pF1KE3396 1275 - 1275 aa - 1275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.0067+/-0.00149; mu= -17.5760+/- 0.084
 mean_var=472.4595+/-112.684, 0's: 0 Z-trim(104.3): 235  B-trim: 289 in 1/52
 Lambda= 0.059005
 statistics sampled from 7690 (7852) to 7690 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.241), width:  16
 Scan time:  4.530

The best scores are:                                      opt bits E(32554)
CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3          (1275) 8256 719.9  1e-206


>>CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3               (1275 aa)
 initn: 8256 init1: 8256 opt: 8256  Z-score: 3824.7  bits: 719.9 E(32554): 1e-206
Smith-Waterman score: 8256; 99.5% identity (100.0% similar) in 1275 aa overlap (1-1275:1-1275)

               10        20        30        40        50        60
pF1KE3 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKGTLEGQLNESMFL
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS43 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTLEGQLNESMFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 TAELQENTPVVEAIVLLTELIRENFRNSRLKQCLLPTLGELIYLVATQEEKKKNPRECWA
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS43 TAELQENTPVVEAIVLLTELIRENFRNSKLKQCLLPTLGELIYLVATQEEKKKNPRECWA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 VPLAAYTVLMRCLREGEERVVNHMAAKIIENVCTTFSAQAQGFITGEIGPILWYLFRHST
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS43 VPLAAYTVLMRCLREGEERVVNHMAAKIIENVCTTFSAQSQGFITGEIGPILWYLFRHST
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 ADSLRITAVSALCRITRHSPTAFQNVIEKVGLNSVINSLASAICKVQQYMLTLFTAMLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS43 ADSLRITAVSALCRITRHSPTAFQNVIEKVGLNSVINSLASAICKVQQYMLTLFAAMLSC
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 GIHLQRLIQEKGFVSTIIRLLDSPSTCIRAKAFLVLLYILIYNREMLLLSCQARLVMYIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GIHLQRLIQEKGFVSTIIRLLDSPSTCIRAKAFLVLLYILIYNREMLLLSCQARLVMYIE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE3 RDSRKTTPGKEQQSGNEYLSKCLDLLICHIVQELPRILGDILNSLANVSGRKHPSTVQVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RDSRKTTPGKEQQSGNEYLSKCLDLLICHIVQELPRILGDILNSLANVSGRKHPSTVQVK
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE3 QLKMCLPLMPIVLHLVTSQVFRPQVVTEEFLFSYGTILSHIKSVDSGETNIDGAIGLTAS
       :::.::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLKLCLPLMPVVLHLVTSQVFRPQVVTEEFLFSYGTILSHIKSVDSGETNIDGAIGLTAS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE3 EEFIKITLSAFEAIIQYPILLKDYRSTVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEFIKITLSAFEAIIQYPILLKDYRSTVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE3 LLVNQEFGDGKEKASVDSDSNLLALIRDVLLPQYEHILLEPDPVPAYALKLLVAMTEHNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLVNQEFGDGKEKASVDSDSNLLALIRDVLLPQYEHILLEPDPVPAYALKLLVAMTEHNP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE3 TFTRLVEESKLIPLIFEVTLEHQESILGNTMQSVIALLSNLVACKDSNMELLYEQGLVSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TFTRLVEESKLIPLIFEVTLEHQESILGNTMQSVIALLSNLVACKDSNMELLYEQGLVSH
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE3 ICNLLTETATLCLDVDNKNNNEMAAPLLFSLLDILHSMLTYTSGIVRLALQAQKSGSGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ICNLLTETATLCLDVDNKNNNEMAAPLLFSLLDILHSMLTYTSGIVRLALQAQKSGSGED
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE3 PQAAEDLLLLNRPLTDLISLLIPLLPNEDPEIFDVSSKCLSILVQLYGGENPDSLSPENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQAAEDLLLLNRPLTDLISLLIPLLPNEDPEIFDVSSKCLSILVQLYGGENPDSLSPENV
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE3 EIFAHLLTSKEDPKEQKLLLRILRRMITSNEKHLESLKNAGSLLRALERLAPGSGSFADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EIFAHLLTSKEDPKEQKLLLRILRRMITSNEKHLESLKNAGSLLRALERLAPGSGSFADS
             1210      1220      1230      1240      1250      1260

             1270     
pF1KE3 AVAPLALEILQAVGH
       :::::::::::::::
CCDS43 AVAPLALEILQAVGH
             1270     




1275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:14:21 2016 done: Tue Nov  8 02:14:21 2016
 Total Scan time:  4.530 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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